PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01028683001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | Trihelix | ||||||||
Protein Properties | Length: 220aa MW: 25411.8 Da PI: 10.1983 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 72.2 | 9.2e-23 | 25 | 112 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++qe+ +Li+a++e++ +l+rg+lk+ +Weev+ + ++s++qC++k+e+l+kry+++k++ + + +ss++pyf+ ++ GSVIVT01028683001 25 WSHQETTHLIQAYQEKWYSLKRGQLKASQWEEVAVTVaarcNYDEPSKSATQCRHKIEKLRKRYRAEKQRIVIG-AAASSSWPYFHLMD 112 ********************************9988854335556699***********************998.666779*****998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.0E-21 | 24 | 114 | No hit | No description |
PROSITE profile | PS50090 | 6.33 | 24 | 85 | IPR017877 | Myb-like domain |
SMART | SM00595 | 1.3E-7 | 32 | 119 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MATPSPPPPS SSPPNRPKKA QPLPWSHQET THLIQAYQEK WYSLKRGQLK ASQWEEVAVT 60 VAARCNYDEP SKSATQCRHK IEKLRKRYRA EKQRIVIGAA ASSSWPYFHL MDSLERGPLP 120 ISAQPMSVLK YEKAYPYSHN CKPNDDNVGN DDYSNSSNDE DSGALKTSRR RRGRWWWREG 180 RAWFGSRAKH LTSFSGRFCF QEELIFIVII SFLFFIRML* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM451800 | 0.0 | AM451800.2 Vitis vinifera contig VV78X191872.2, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010652521.1 | 1e-122 | PREDICTED: trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A438IMR0 | 1e-121 | A0A438IMR0_VITVI; Trihelix transcription factor ASIL2 | ||||
TrEMBL | F6I024 | 1e-121 | F6I024_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0005g06670.t01 | 1e-122 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP4059 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 3e-29 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01028683001 |