PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028683001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 220aa    MW: 25411.8 Da    PI: 10.1983
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028683001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.29.2e-2325112286
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        W++qe+ +Li+a++e++ +l+rg+lk+ +Weev+  +         ++s++qC++k+e+l+kry+++k++   + + +ss++pyf+ ++
  GSVIVT01028683001  25 WSHQETTHLIQAYQEKWYSLKRGQLKASQWEEVAVTVaarcNYDEPSKSATQCRHKIEKLRKRYRAEKQRIVIG-AAASSSWPYFHLMD 112
                        ********************************9988854335556699***********************998.666779*****998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-2124114No hitNo description
PROSITE profilePS500906.332485IPR017877Myb-like domain
SMARTSM005951.3E-732119IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MATPSPPPPS SSPPNRPKKA QPLPWSHQET THLIQAYQEK WYSLKRGQLK ASQWEEVAVT  60
VAARCNYDEP SKSATQCRHK IEKLRKRYRA EKQRIVIGAA ASSSWPYFHL MDSLERGPLP  120
ISAQPMSVLK YEKAYPYSHN CKPNDDNVGN DDYSNSSNDE DSGALKTSRR RRGRWWWREG  180
RAWFGSRAKH LTSFSGRFCF QEELIFIVII SFLFFIRML*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4518000.0AM451800.2 Vitis vinifera contig VV78X191872.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652521.11e-122PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A438IMR01e-121A0A438IMR0_VITVI; Trihelix transcription factor ASIL2
TrEMBLF6I0241e-121F6I024_VITVI; Uncharacterized protein
STRINGVIT_07s0005g06670.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.13e-29Trihelix family protein