PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015462001
Common NameVIT_11s0016g04600
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 399aa    MW: 43871.9 Da    PI: 7.6942
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015462001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.8e-32195250156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  GSVIVT01015462001 195 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 250
                        68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-16192253IPR009057Homeodomain-like
PROSITE profilePS5129413.355192252IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-28193253IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-26195250IPR006447Myb domain, plants
PfamPF002496.6E-7197248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MASPSELSLD CKPHSYSLLL KSFGDQPDQT QKLEDFLARL EEERLKIEVF KRELPLCMQL  60
LTDAVEASRQ QLQSYRANQG ARPFLEEFIP LKHSTPKGSE KTSNMSDKAN WMTSAQLWSP  120
AGDETKQQST LTSSKEPDIG FTVSPKLGFD NKQRNGGAFL PFSKERNSCP SPNLRNCEAQ  180
TTAAAPTANT QTHRKARRCW SPDLHRRFVN ALQMLGGSQV ATPKQIRELM KVDGLTNDEV  240
KSHLQKYRLH TRRPSPSPQA TGAAAPQLVV VGLGGIWVPP EYATAAHTGG TTLYGAHPPS  300
HTSPHYCGPP VPQDFYAAPA QPHHHSLHHQ LHMYKASPQT QSSPDSDMRG AGDRSESIED  360
GKSESSSWKG ESGENGGERK GLVTLRDDGE ESNRAMEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13195248255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13195248255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-13195248154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-13195248154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-13195248154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-13195248154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13195248255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13195248255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13195248255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13195248255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13195248255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13195248255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}.
UniprotTISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4755970.0AM475597.2 Vitis vinifera contig VV78X169943.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656386.10.0PREDICTED: myb family transcription factor EFM
SwissprotQ9ZQ851e-120EFM_ARATH; Myb family transcription factor EFM
TrEMBLF6HH570.0F6HH57_VITVI; Uncharacterized protein
STRINGVIT_11s0016g04600.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP43031624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-116G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]