PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01013486001

Common Name

VIT_13s0067g02860

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

SRS

Protein Properties

Length: 323aa MW: 34487.6 Da PI: 8.0562

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01013486001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	195.1	2.4e-60	112	270	6	154
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 +C dCGn+ak+dC+++ CRtCCk rg+dCathvkstWvpaa+rrerq++ aa + +s ++a +kr+r s++++++s+t++s ++ GSVIVT01013486001 112 RACVDCGNKAKRDCSYRMCRTCCKGRGYDCATHVKSTWVPAARRRERQAAVAAFVAGGGSSGsSSAVAKRPRLG-STQAATASHTSTSLPNT 202 58**********************************************999988877766366677777765.77777778888888888 PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++++s lP++v+++avfrc+rv++++dg++e+ Yq+ v+i+GhvfkG+LydqGl+e GSVIVT01013486001 203 PRSFDATSthqdasfkesLPRQVRAPAVFRCIRVTAIEDGQNEYVYQAMVKINGHVFKGFLYDQGLNE 270 888888888899***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.5E-57	112	269	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-22	114	155	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.1E-26	221	268	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MGENPENIYH EIVATTRTRL LPHSPPSGAP LVWPPPPPSS TTTTHLLNYT FPTNPNMLTT 60 ALGVGLGVFP LFATTPTSTT CAAPLLPPKH TLNDEDNDGD SVNLEDGEGS MRACVDCGNK 120 AKRDCSYRMC RTCCKGRGYD CATHVKSTWV PAARRRERQA AVAAFVAGGG SSGSSSAVAK 180 RPRLGSTQAA TASHTSTSLP NTPRSFDATS THQDASFKES LPRQVRAPAV FRCIRVTAIE 240 DGQNEYVYQA MVKINGHVFK GFLYDQGLNE KGSYPCISEL QLETNASGRN VDSSSPILHK 300 ADAYDASGCR GFLGGKTALE YL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.13681	0.0	bud\| fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269\|PubMed:7647564}.
Uniprot	TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269\|PubMed:7647564}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM461285	0.0	AM461285.2 Vitis vinifera contig VV79X002621.12, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002265716.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 isoform X2
Swissprot	Q94CK9	6e-59	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	F6I5R2	0.0	F6I5R2_VITVI; Uncharacterized protein
STRING	VIT_13s0067g02860.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1313	15	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-50	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	GSVIVT01013486001

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]