PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003212001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 601aa    MW: 66472 Da    PI: 7.6314
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003212001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.4e-18330429198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g +W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  
  GSVIVT01003212001 330 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQPEGLPLKVQDAKGHEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-P 419
                        89**************************666667778***************9989999999***9.********************766.7 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        e++lv+++++
  GSVIVT01003212001 420 EGKLVMGFRK 429
                        7777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-30326435IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-19327429IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-21328429No hitNo description
SMARTSM010196.2E-19330431IPR003340B3 DNA binding domain
PROSITE profilePS5086311.011330431IPR003340B3 DNA binding domain
PfamPF023621.8E-15330429IPR003340B3 DNA binding domain
PROSITE profilePS5105010.976553601IPR011124Zinc finger, CW-type
PfamPF074968.7E-8558594IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MSSSTVKICF NSECTDRKSE RLKKGWRTRS GDCVELCDRC GSLYDEGRFC ETFHSNASGW  60
RGCKSCAKRV HCGCIASIHS FTLLDTGGIE CIPCARKNVV LTPNPAWPPH FFLPLPERLK  120
DPVKNWSQSQ PVWRASNLFN TSIPQSDLRP RMPSEADLST GVDRLIVSER SSASSMEKKK  180
IEDSSERSMN GGLKLGALEM LENGNSGTNC EEQPASCVNI PQQSSSLNDD HSAPLLSLAV  240
PYASSSETNG QTVVSGTLSQ PTPSPPLAKK FSGHPHNGVD SSGEAQVRNG RPRGDARGRN  300
QLLPRYWPRI TDQELQQISG DSNSVITPLF EKMLSASDAG RIGRLVLPKK CAEAYFPAIS  360
QPEGLPLKVQ DAKGHEWIFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRLEPE  420
GKLVMGFRKA STAPSSDQGN ETIKTGNGGS THGDADLADP ASAWSKVDKS GYIAKEALGA  480
KSSIPRKRKN STLGSKSKRL RIENEDLIEL KLTWEEAQGL LRPPLNHVPN VVVIEGYEFE  540
EYEQMPILCS ICISEKIQWA QCEDCFKWRK LPADVCLSSR WTCSENSWDP ERYNHQISTI  600
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-653084331126B3 domain-containing transcription repressor VAL1
5yzz_C2e-653084331126B3 domain-containing transcription repressor VAL1
5z00_C2e-653084331126B3 domain-containing transcription repressor VAL1
5z00_G2e-653084331126B3 domain-containing transcription repressor VAL1
5z00_K2e-653084331126B3 domain-containing transcription repressor VAL1
5z00_M2e-653084331126B3 domain-containing transcription repressor VAL1
6j9a_A2e-653084332127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.195210.0bud| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4887230.0AM488723.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X113969.14, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010646163.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLF6H7U30.0F6H7U3_VITVI; Uncharacterized protein (Fragment)
STRINGVIT_00s0181g00260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.11e-132VP1/ABI3-like 3