PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000847001
Common NameLOC100258442, VIT_13s0019g01220
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 436aa    MW: 48797.4 Da    PI: 5.6681
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000847001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.75.6e-139494301374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lL++cA++v++g+ e+a+  L+++s+laspdgd++qR+aayfteALa r+++ +++l kal++++ s  + see+ ++klf+e++P+lk
  GSVIVT01000847001  49 LIRLLVACANHVAAGSIENANIGLEHISHLASPDGDTVQRIAAYFTEALADRMLKGWPGLHKALNSTKIS--SISEEILVQKLFFELCPFLK 138
                        5799************************************************************999998..59****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        +s++++NqaI ea+ege++vHiiD++  + +QW++Llq+L++Rpegpp+lRiTg+++    +ke l  ++ +L+k Ae+l++pf+fn+ +++
  GSVIVT01000847001 139 LSYVITNQAIIEAMEGEKMVHIIDLNSFESAQWINLLQSLSARPEGPPHLRITGIHE----QKEVLDLMALQLTKEAEKLDIPFQFNP-IVS 225
                        *********************************************************....9**************************.799 PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrll...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                        +le+l++e+Lrvk+gEala+++vlqlh+ll               + s+   ++  ++L ++++lsPk++vv+eqe++ n ++++er++eal
  GSVIVT01000847001 226 KLENLDFESLRVKTGEALAISSVLQLHTLLaiddemvgkspsaskNTSAVHLQRMGSFLAALWGLSPKLMVVTEQESNNNCPTLMERVMEAL 317
                        9****************************************998633333334699************************************ PP

               GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                        ++y+alfd+le++l+r+s er+kvE++l+g+ei+n++aceg er+erhe+lekW +rle aGF+ vpls++ + qa++ll  ++ dgyr++e
  GSVIVT01000847001 318 NFYAALFDCLESTLSRASIERQKVEKMLFGEEIKNIIACEGPERKERHEKLEKWVMRLELAGFGRVPLSYQGMLQASRLLVSYGYDGYRMKE 409
                        ******************************************************************************************** PP

               GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                        e+g+lv++W+drpL+svSaWr
  GSVIVT01000847001 410 ENGCLVICWQDRPLFSVSAWR 430
                        ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.99523410IPR005202Transcription factor GRAS
PfamPF035141.9E-13649430IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAGMIQEDGS SSVTSSPLQI FSLMSLSPGL GSPYPWLKEL KSEERGLYLI RLLVACANHV  60
AAGSIENANI GLEHISHLAS PDGDTVQRIA AYFTEALADR MLKGWPGLHK ALNSTKISSI  120
SEEILVQKLF FELCPFLKLS YVITNQAIIE AMEGEKMVHI IDLNSFESAQ WINLLQSLSA  180
RPEGPPHLRI TGIHEQKEVL DLMALQLTKE AEKLDIPFQF NPIVSKLENL DFESLRVKTG  240
EALAISSVLQ LHTLLAIDDE MVGKSPSASK NTSAVHLQRM GSFLAALWGL SPKLMVVTEQ  300
ESNNNCPTLM ERVMEALNFY AALFDCLEST LSRASIERQK VEKMLFGEEI KNIIACEGPE  360
RKERHEKLEK WVMRLELAGF GRVPLSYQGM LQASRLLVSY GYDGYRMKEE NGCLVICWQD  420
RPLFSVSAWR FKRYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-71374297378Protein SCARECROW
5b3h_A1e-71334292377Protein SCARECROW
5b3h_D1e-71334292377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.239070.0bud| flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4316830.0AM431683.1 Vitis vinifera contig VV78X246431.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267910.10.0PREDICTED: scarecrow-like protein 3 isoform X1
RefseqXP_010645688.10.0PREDICTED: scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A438GU360.0A0A438GU36_VITVI; Scarecrow-like protein 3
TrEMBLF6GX840.0F6GX84_VITVI; Uncharacterized protein
STRINGVIT_13s0019g01220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]