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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g12960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 248aa MW: 27566.6 Da PI: 10.5738 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.2 | 6.7e-32 | 142 | 197 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGG++ AtPk+i+elmkv+gLt+++vkSHLQk+Rl+ Vradi11g12960.1 142 KQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLH 197 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.73E-18 | 139 | 200 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.094 | 139 | 199 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-29 | 139 | 200 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-27 | 142 | 197 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.4E-7 | 144 | 194 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MLSRKMGFRE YIEALEEERR KIQVFPKELP LSLELVTQGK TLKKKAIIGY PFVISVQLWN 60 SNPPPTKEDV PRKANVVEVK RNGGAFQPFQ REEKSAIVDG KANNYASAIG KTPSSPPVPA 120 TSSTGPVRID SRKEEKGQTQ RKQRRCWSQE LHKRFLHALQ QLGGADSATP KQIRELMKVD 180 GLTNDEVKSH LQKFRLHTRR SPIIHNNGNS QAAPLFLVGN IFVQPPEYGV VATSTASGGE 240 LTTMSLD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g12960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-148 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014520220.1 | 1e-137 | transcription factor HHO2 | ||||
Swissprot | Q9FPE8 | 2e-44 | HHO3_ARATH; Transcription factor HHO3 | ||||
TrEMBL | A0A1S3VPK6 | 1e-135 | A0A1S3VPK6_VIGRR; transcription factor HHO2 | ||||
STRING | XP_007153350.1 | 1e-128 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3918 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25550.1 | 3e-46 | G2-like family protein |
Publications ? help Back to Top | |||
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