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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g12920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 302aa MW: 33077.8 Da PI: 10.8397 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 99.6 | 1.9e-31 | 113 | 217 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tpsdv+k++rlv+pk++ae+h + ++++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ Vradi11g12920.1 113 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsvngvSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRS 206 89***************************9998886666799**************************************************87 PP SSSEE..EEEE CS B3 86 grsefelvvkv 96 +++l++ + Vradi11g12920.1 207 TGPDKQLYIDW 217 66777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-40 | 108 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.76E-30 | 111 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.06E-28 | 112 | 206 | No hit | No description |
SMART | SM01019 | 4.3E-25 | 113 | 221 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.507 | 113 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-28 | 113 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MRRERLLLLS STNLSPPPPS TTLCRVGSAA SAILDPEGAA AGNTEAESRK LPSSKYKGVV 60 PQPNGRWGAQ IYEKHQRSKR SRGVVRRRGG AAAAGTGNSI SGACFVKARE QLFEKAVTPS 120 DVGKLNRLVI PKQHAEKHFP LQSVNGVSAT AAKGVLLNFE DVAGKVWRFR YSYWNSSQSY 180 VLTKGWSRFV KEKNLKAGDT VCFHRSTGPD KQLYIDWKAR NNNVNEVGLF GPVGPVVEPI 240 QMVRLFGVNI LKLPGSEPNG NNNASGTIPG FCNGKRREME LFSIWNSDFA RNMFFPLPIS 300 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 4e-58 | 110 | 221 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g12920.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521390.1 | 1e-137 | AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q9C6M5 | 4e-67 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A1S3VSV9 | 1e-136 | A0A1S3VSV9_VIGRR; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
STRING | XP_007154354.1 | 1e-126 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 8e-68 | RAV family protein |