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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g11430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 284aa MW: 31834.7 Da PI: 7.0678 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 69.2 | 6.4e-22 | 166 | 210 | 1 | 45 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 k+r++W+peLH+rFv+a+e+LGGs+ AtPk+i+elm v+gLt+++ Vradi11g11430.1 166 KQRRCWSPELHHRFVKALEELGGSQAATPKQIRELMRVDGLTNDE 210 79****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.09E-9 | 164 | 217 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-18 | 165 | 218 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-16 | 166 | 210 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MVAAISALKE ELAKCRALKS EPVLEEFIPL KREYEEKEDS EKEEECRDKN DWVSSFQLWN 60 TEDEACNRSK ACRLEQKQKK SKGEERKSVE KDYFRHHSNR NVERGFVMPL STYLATEEEC 120 VMDGLSLKTP ATAVKNTREG RGSRISSCRV VSSATSPMLL PQSGRKQRRC WSPELHHRFV 180 KALEELGGSQ AATPKQIREL MRVDGLTNDE KYRLHTRRVP AATAANSSIS GADLGGLWMH 240 KESMKGTSSC SPQGPLQFAT QSGETTSTTE GDNMIDDDVK SDL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g11430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-162 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014519321.1 | 0.0 | transcription factor HHO2 isoform X1 | ||||
TrEMBL | A0A1S3VLT1 | 0.0 | A0A1S3VLT1_VIGRR; transcription factor HHO2 isoform X1 | ||||
STRING | GLYMA07G29490.1 | 1e-137 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 2e-32 | G2-like family protein |