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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g11310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 353aa MW: 39693.4 Da PI: 8.1171 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.5 | 2.8e-19 | 219 | 310 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 vl ps+ + ++++lp fae++ +g++ ++l+ ++gr+W+v++ yr+++ l++GW eF +n+L egD++vF+l +++e l v+v Vradi11g11310.1 219 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLPNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVTV 307 78899******************877743...5***************665555..66************************99999999**99 PP E-S CS B3 97 frk 99 fr Vradi11g11310.1 308 FRV 310 985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-25 | 208 | 309 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-25 | 209 | 310 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.92E-24 | 214 | 309 | No hit | No description |
PROSITE profile | PS50863 | 14.17 | 216 | 311 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-20 | 216 | 311 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-17 | 219 | 309 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MYEGNSSFIV HIFNLSTSEI NYQSAMRNHM EGPCFVNYNH IFEEMEDIDS IDLSDLSPSY 60 LTSGAMQNKG FAGSVDQLTP GKSHTPALQN LFNGGSKLNR VNWGDGGSSY SSKSANSQGS 120 QSTRDIGVQF NAVEFKRSTD ELKLRYSNEE AVNKTAKKKR KSESQGEEPS GENEEEAEMR 180 YRFYESASAR KRTVTAEERE RAINASKAFE PTNPFCRVVL RPSYLYRGCI MYLPSCFAEK 240 NLNGVSGFIK LQLPNGRQWS VRCLYRGGRA KLSQGWFEFT VENNLGEGDV CVFELLRTKE 300 VVLQVTVFRV TEDANLLNSP PVQQLSQNMS HTKLLNPHLQ HRVSSTVKLI RN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-73 | 182 | 312 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-73 | 182 | 312 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g11310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022643270.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X2 | ||||
Refseq | XP_022643271.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X2 | ||||
Swissprot | Q8L3W1 | 1e-84 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A3Q0FGT0 | 0.0 | A0A3Q0FGT0_VIGRR; B3 domain-containing transcription factor VRN1 isoform X2 | ||||
STRING | XP_007153153.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 8e-79 | B3 family protein |
Publications ? help Back to Top | |||
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