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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g11130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 1013aa MW: 111875 Da PI: 8.0357 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.1 | 1.7e-40 | 89 | 166 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hska+++l+s+++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Vradi11g11130.1 89 MCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLSNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 166 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.1E-34 | 84 | 151 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.966 | 87 | 164 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-37 | 88 | 168 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.9E-30 | 90 | 163 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 1.03E-6 | 759 | 905 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.7E-6 | 760 | 910 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.13E-6 | 760 | 903 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1013 aa Download sequence Send to blast |
MEKVAAPPIL MQRKRDLSYG VVAGSPSESW KWEWDSVRFA GKPPSDDVVF EEESVAAVAP 60 LQLNLAGRVS GGGNKRVRSG SPGTATYPMC QVDNCREDLS KAKDYHRRHK VCEAHSKASK 120 ALLSNQMQRF CQQCSRFHPL SEFDEGKRSC RRRLAGHNRR RRKTQPEDVT SATQVPAAAV 180 AAAANLEIFN LLTAIAGASQ GKFEERSQVP DREQLVQILN RIPLPADLAT KLRDAGNVNG 240 KKDHVQSETP SSYHHHDQLN HTPATPLTMD LLAVLSTSLS GSGPDANASP SQNRSCSSDG 300 GSVKSRSSAD QTRQQHFFSV GGERSSSSSQ SPVEDSDCQE DVRVNLPLQL FSSSPEEDSL 360 PKLASSRKYF SSDSSNPAEE RSPSSSPPSP PVVEMQFDLQ GGATGLKPES ISSGRGVNSN 420 KEASQSHSCN ISLDLFKGSN KRIQQPSWLQ SVPFQAGYTS SGSDHSPPSL NSDAQDRTGR 480 IMFKLFDKHP SHFPETLRAQ IYSWLSNRPS DMESYIRPGC VVLSLYASMS SAAWEKLEEN 540 FLQHVHSLIQ NSDSDFWRSG RFLVHSGSQL ASHKDGKVRI CKPWRTWKSP ELISVSPLAI 600 VSRQETSISL KGRNLSTPGT KIHCTGTGSY SSAEVIRSSY PGVVYDNIKL SGFKVQDVSP 660 GVVGRFFIEI ENGFKGNSFP VIIANETICN ELRLLESEFN EEEKICDAIS EEHEHNFGRP 720 RSREEALHFL NELGWLFQRE RFSYMHEVPC YSLDRFKFVL TFAVERNCCM LVKTLLDVLV 780 DKHLQGESLS TGSVEMLNAI QLLNRAVKRK NIGMVDLLIH YSLPNKNSTS SKYVFPPNLE 840 GPAGITPLHL AACTSGSEGV VDSLTSDPQE IGLKCWESLV DANGQTPHAY AMMRNNNSYN 900 VLVARKLADR RRAEISVTIE NEVEQASLRV ELNQKQSNLL KRGQSSCAKC ATAEIRYNRR 960 FSGSHGLLHR PFIYSMLAVA AVCVCVCVFF RGRPCVGSVA PFSWETLDFG TM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-32 | 80 | 163 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g11130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014520750.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A1S3VR29 | 0.0 | A0A1S3VR29_VIGRR; squamosa promoter-binding-like protein 14 | ||||
STRING | XP_007153124.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9694 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Publications ? help Back to Top | |||
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