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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g11090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 280aa MW: 31735.3 Da PI: 8.4275 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.8 | 1.4e-29 | 19 | 70 | 2 | 53 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 prlrWtpeLH++Fv a+e LGG++kAtPk +l+lm+vkgLt++hvkSHLQ + Vradi11g11090.1 19 PRLRWTPELHRCFVYAIETLGGHHKATPKLVLQLMDVKGLTISHVKSHLQLF 70 8*************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.536 | 15 | 75 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 15 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-15 | 17 | 76 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-22 | 19 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.1E-6 | 20 | 68 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MGSCGREGVV RQYIRSKVPR LRWTPELHRC FVYAIETLGG HHKATPKLVL QLMDVKGLTI 60 SHVKSHLQLF FLFFKNNQMY RSMKGDSCRQ DKTSTQHRKQ HDDEVGDVGF HSCFKSIGKE 120 SDSQPSCSNF SLKRARIEKT SFLSGFPQCS QRICDAVPNP YTTFYDYLHS MAEQKGIKKI 180 CAGSILQTQP LSTTFLPMLP SQASDFLQVA YLNDKQALNE VEKSCRVEAE DEDMGGCELS 240 LSISLPQPHP SSQRNVAMNV RFCDEKPLHE FLRQQCLSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-17 | 20 | 70 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-17 | 20 | 70 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-17 | 20 | 70 | 3 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-17 | 20 | 70 | 3 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-17 | 20 | 70 | 3 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-17 | 20 | 70 | 3 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-17 | 20 | 70 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-17 | 20 | 70 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-17 | 20 | 70 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-17 | 20 | 70 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-17 | 20 | 70 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-17 | 20 | 70 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g11090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 2e-74 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014519772.1 | 0.0 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A1S3VNK6 | 1e-180 | A0A1S3VNK6_VIGRR; putative Myb family transcription factor At1g14600 | ||||
STRING | XP_007153120.1 | 1e-162 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5539 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 4e-30 | G2-like family protein |