![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi11g10410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 387aa MW: 43093.8 Da PI: 6.3195 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.1 | 2.9e-11 | 20 | 44 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprl+WtpeLH+rF+ea +qLGG++ Vradi11g10410.1 20 KPRLKWTPELHQRFIEATNQLGGAD 44 79*********************97 PP | |||||||
2 | G2-like | 36.9 | 8e-12 | 83 | 111 | 25 | 53 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkY 53 +AtPk+++++m+++gLtl+h+kSHLQ + Vradi11g10410.1 83 AEATPKSLMRVMGIPGLTLYHLKSHLQAF 111 57*************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-23 | 18 | 45 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.8E-23 | 85 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 2.1E-21 | 159 | 205 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 387 aa Download sequence Send to blast |
MDLQNMQNQS MHFVLSTDAK PRLKWTPELH QRFIEATNQL GGADSEYNTN FINLTVSITI 60 IVIIGFCSTS YLILFFTLWH LVAEATPKSL MRVMGIPGLT LYHLKSHLQA FIPLLLGKSQ 120 QLDTSSDSKQ EDYIETKSSD GHCSREISLG AQNQITENMQ IAQALQMQME VQRKLYEQIE 180 VQKHLQLRIE AQGKYLQSVL KKAQEALAGY NSAPVGIELT KAELSQLVTI INNACPSSPI 240 SELTETRGLS LSCGDRKRDR GTMCSLESSL TSSESSGRKE EKQSMEEIEE FKSSNNASVE 300 LPLMGFHTEN KASNTGSSNE ASGRKRSAAT KSNDGRYVVE QPCGKRSGNK FRKPEMLDLN 360 SQCQIDMDST TSKTLDLNCS LNFWEP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi11g10410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014520124.1 | 0.0 | myb family transcription factor PHL8 isoform X1 | ||||
TrEMBL | A0A1S3VPX9 | 0.0 | A0A1S3VPX9_VIGRR; myb family transcription factor PHL8 isoform X1 | ||||
STRING | XP_007157612.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5218 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69580.1 | 1e-63 | G2-like family protein |