PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g09310.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 476aa    MW: 51989.4 Da    PI: 7.4948
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g09310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.72.2e-11195251155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  Vradi11g09310.1 195 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 251
                      57*******************4444.2344336655.779999**************98 PP
2AP250.74.6e-16294345155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Vradi11g09310.1 294 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 345
                      57****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-9195251IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-15195261IPR016177DNA-binding domain
CDDcd000183.46E-19195261No hitNo description
Gene3DG3DSA:3.30.730.107.5E-13196260IPR001471AP2/ERF domain
PROSITE profilePS5103217.649196259IPR001471AP2/ERF domain
SMARTSM003802.3E-23196265IPR001471AP2/ERF domain
PRINTSPR003671.4E-6197208IPR001471AP2/ERF domain
PfamPF008472.4E-10294345IPR001471AP2/ERF domain
CDDcd000181.51E-11294353No hitNo description
SuperFamilySSF541715.82E-18294354IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-18295353IPR001471AP2/ERF domain
SMARTSM003806.0E-31295359IPR001471AP2/ERF domain
PROSITE profilePS5103219.164295353IPR001471AP2/ERF domain
PRINTSPR003671.4E-6335355IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MRKWGNKSYG FEFCDWTQTI SGTAAWWGNG NLKPQVLMDQ NLNQSDVSFV ESSQSQSVSH  60
APPPKLEDFL GDSSAVMRYS DSQTETQDSS LTHMYDHHGS AYFGDQQDLK AIAGFQAFST  120
NSGSEVDDST SIGKTQPSEF GTHSIESSGN EFAAFSGAPT GTLSLAVAQS SEKAVVAVDS  180
GSSKKIVDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQARKGRQG GYDKEEKAAR  240
AYDLAALKYW GPTATTNFPV SNYSKEVEEM KHVTKQEFIA SLRRKSSGFS RGASIYRGVT  300
RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA IKFRGANAVT NFEMNRYDVE  360
AIMKSALPVG GAAKRLKLSL ESEQKVGVSS SQQQNPPCGS INFSAIHQPV ASIPCGIPFD  420
SSTAYYHHNL FQHFHPTNAA TAVSTVTSGN VTGLTALPPP ATTAAEFFIW PHQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g09310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520079.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-174AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1S3VPT80.0A0A1S3VPT8_VIGRR; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_007158361.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-168AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]