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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g08630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 388aa MW: 42994 Da PI: 9.3297 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.9 | 1.1e-28 | 193 | 242 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ Vradi11g08630.1 193 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 242 9************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.76E-13 | 190 | 242 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-25 | 191 | 242 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.2E-21 | 193 | 242 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-5 | 194 | 242 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MELFPAQPDL SLQISPPNAK PTSTWRRSTE EDMDLGFWKR ALDSRNSISS MAKQDSCVTL 60 SLSNPKASSD NSNSSNLIHH FQNGANNATT NPFQPFQQNH YFHQPLFQPP HQSLSQDLGF 120 LRPIRGIPVY QNPPPLPFTQ HHHHHHLPLE PSTTTPSSII SSTNTSSTPF HSQALMRSRF 180 LSRFPAKRSM RAPRMRWTST LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH 240 LQLEGGTVLI GVLMVLMYRT VKTTDRAAAS SGQSDVYDNG SSGDTSDDLM FDIKSSRRSD 300 VSIKQGRSSV NQDKDYHGLW GNSSREAWLH GKTRTDSVGN VPSLEKEMDP KCVSYERISD 360 GSSSSNVSGS SPKKANLDLE FSLGQPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-14 | 194 | 242 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-14 | 194 | 242 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-14 | 194 | 242 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-14 | 194 | 242 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-14 | 194 | 242 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-14 | 194 | 242 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-14 | 194 | 242 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-14 | 194 | 242 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-14 | 194 | 242 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-14 | 194 | 242 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-14 | 194 | 242 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-14 | 194 | 242 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00174 | DAP | Transfer from AT1G32240 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g08630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007158256.1 | 0.0 | hypothetical protein PHAVU_002G137300g | ||||
Swissprot | Q9C616 | 2e-90 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | V7CLW8 | 0.0 | V7CLW8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007158256.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5968 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 4e-71 | G2-like family protein |
Publications ? help Back to Top | |||
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