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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g08600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 792aa MW: 87954.8 Da PI: 5.8164 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.7 | 2.7e-20 | 84 | 139 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Vradi11g08600.1 84 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMK 139 688899***********************************************998 PP | |||||||
2 | START | 146 | 3.5e-46 | 285 | 509 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 la + ++elvk+ + +ep+W +ss e +n +e ++f+ ++ ++ea+r++ vv+m++++lv +ld +W e ++ +a+t Vradi11g08600.1 285 LAASSMAELVKMCQTNEPLWIRSSdgerEVLNFEEHARIFPCPQNlkhrseLRTEASRDTSVVIMNSVTLVDAFLDGQ-KWMELFPsivsRAKT 377 78899*******************7777777778888888777779***99***************************.*************** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 ++ iss g+lqlm+ae+q+lsplv+ R+ f+Ry++q ++g+w+ivd vd+ ++ ++s+ + ++ Sg++i++++ng+s+vtwv Vradi11g08600.1 378 VQIISSVasghasGTLQLMYAEFQVLSPLVStRETHFLRYCQQnAEEGTWAIVDFPVDNFHQNF-HPSYPKYCRRSSGCVIQDMPNGYSRVTWV 470 ****998899************************************************999998.899999999******************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 eh+ ++++ +h+++ v sg+a+ga++w+ lqrqce+ Vradi11g08600.1 471 EHAKVEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCER 509 *************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.55E-19 | 75 | 142 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-21 | 77 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.925 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.8E-19 | 82 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.45E-18 | 84 | 142 | No hit | No description |
Pfam | PF00046 | 7.2E-18 | 84 | 139 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.613 | 275 | 512 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.89E-32 | 276 | 511 | No hit | No description |
CDD | cd08875 | 2.93E-110 | 279 | 508 | No hit | No description |
SMART | SM00234 | 3.5E-29 | 284 | 509 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-38 | 285 | 509 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.57E-19 | 527 | 765 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MYGDCQVMSS MGGNVVVNSD TLFSSSIQNS NFNFIPTMPF QPFPSMKEEE MMLRGKEEME 60 SGSGSEQVED KSGNEQESEQ PTKKKRYHRH TARQIQEMEA LFKECPHPDD KQRLKLSHEL 120 GLKPRQVKFW FQNRRTQMKA QQDRADNIIL RAENETLKSE NYRLQAALRN VMCPNCGGQC 180 IMGADLGLDE HQLRMENARL REELERVCCL TSRYTGRSLQ TMAAGPTLMA PSLDLDMNIY 240 PRHYSDPVAP CTEMIPVPML PPEASPFAEG GGILMEEEKS LALELAASSM AELVKMCQTN 300 EPLWIRSSDG EREVLNFEEH ARIFPCPQNL KHRSELRTEA SRDTSVVIMN SVTLVDAFLD 360 GQKWMELFPS IVSRAKTVQI ISSVASGHAS GTLQLMYAEF QVLSPLVSTR ETHFLRYCQQ 420 NAEEGTWAIV DFPVDNFHQN FHPSYPKYCR RSSGCVIQDM PNGYSRVTWV EHAKVEEKPV 480 HQIFSNYVYS GMAFGAQRWL GVLQRQCERV ASLMARNISD LGVIPSPEAR KNLMKLAQRM 540 IKTFGLNMST SGGQSWTAIS DSPEDTVRIT TRKVTEPGQP NGVILSAVST TWLPYSHTKV 600 FDLLRDERHR SQMDALSNGN SLNEVAHIAN GSHPGNCISL LRINVASNSS QNVELMLQES 660 CTDQSGSLVV YTTIDVDSIQ LAMSGEDPSC IALLPQGFMI VPMLSSPNVD TPINGNSSES 720 PSLNSGCLLT MGLQVLASTI PSAKLNLSSV TAINNHLCNT LHQIEAALSS SSENGTNFLC 780 TEPTVSGAPK Q* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g08600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521373.1 | 0.0 | homeobox-leucine zipper protein HDG5 isoform X2 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A1S3VSM0 | 0.0 | A0A1S3VSM0_VIGRR; homeobox-leucine zipper protein HDG5 isoform X2 | ||||
STRING | XP_007158253.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10946 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |