![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi11g05430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 196aa MW: 22512.3 Da PI: 7.504 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.6e-19 | 47 | 101 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++++++eq++ Le+ F +++++ e++ +LA +lgL+ rqV vWFqNrRa++k+ Vradi11g05430.1 47 RKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKN 101 45589************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 108.4 | 5.3e-35 | 46 | 133 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ++kr+ls+eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk++++a e++rLe+e e+ Vradi11g05430.1 46 NRKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKSHEANLLEKCRLETEAEKEI 133 58*******************************************************************************9987644 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.103 | 42 | 102 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-17 | 45 | 106 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.68E-18 | 47 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.85E-16 | 47 | 103 | No hit | No description |
Pfam | PF00046 | 1.6E-16 | 47 | 101 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-21 | 49 | 109 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.0E-5 | 73 | 82 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 77 | 100 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.0E-5 | 82 | 98 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 196 aa Download sequence Send to blast |
MMFIPQLYPA DAPYTQIIAQ QGESKKPKRR RSKKNKGGEN GASEANRKRK LSAEQVNLLE 60 QNFGNEHKLE SERKDRLALE LGLDPRQVAV WFQNRRARWK NKKLEEEYSN LKKSHEANLL 120 EKCRLETEAE KEIQRLLESG DRVPSNSSSS SQSQSMEAVD PPFFGVFGVD GYDDDVFYGP 180 ETHCMNALEW INLYM* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 26 | 33 | PKRRRSKK |
2 | 28 | 49 | RRRSKKNKGGENGASEANRKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi11g05430.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-164 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014520467.1 | 1e-121 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 1e-61 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A1S3VQJ9 | 1e-119 | A0A1S3VQJ9_VIGRR; homeobox-leucine zipper protein ATHB-40 | ||||
STRING | XP_007156908.1 | 1e-108 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-47 | homeobox protein 40 |
Publications ? help Back to Top | |||
---|---|---|---|
|