![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi11g03890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 593aa MW: 66649.5 Da PI: 6.953 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.6 | 1.3e-07 | 256 | 313 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++ +++ +I ++ + ++ k+f +g ++ +e+Aa+a++ a++k++g Vradi11g03890.1 256 SQYRGVTRSVLLSSFLNHITKeEKQFKqVNsKNFIVGGYDMEEKAARAYDMAALKYWG 313 6788888888888888888885555667667*************************98 PP | |||||||
2 | AP2 | 45.8 | 1.5e-14 | 358 | 407 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Vradi11g03890.1 358 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 407 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-9 | 257 | 322 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.182 | 257 | 321 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-5 | 257 | 313 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-9 | 257 | 323 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.4E-5 | 257 | 327 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-17 | 356 | 416 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.87E-25 | 356 | 417 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-18 | 357 | 415 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-33 | 357 | 421 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 357 | 415 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-9 | 358 | 407 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 593 aa Download sequence Send to blast |
MKPVENRETV DINYQNSCLG FSLSPQMNIT GAAAETVPPT YYHHTPLHNY GLLGEHVGMF 60 SSLPIMPLKS NVSFYGIEAI SRSQPQEMAT TSAIPLSLDS MFYNQLSCHG SNDPNNENHV 120 QENISKQQLP YYSSLRNNHD VILEGSKQQL PCIAEDEVAC LKSWFSRDFP ACQAQESRMF 180 VPLEDNGSKS GPNIGSITYE DLHSLNLSVS PTRRSSCVTG SPAINDTKKR GLEMVDQNQK 240 KIVHRKSIDT FGQRTSQYRG VTRSVLLSSF LNHITKEEKQ FKQVNSKNFI VGGYDMEEKA 300 ARAYDMAALK YWGPSSHINF PLENYQNELE EMKNMTRQEY VAHLRRKSSG FSRGASMYRG 360 VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGVNA VTNFDITRYD 420 VEKIMASDNL LSSEQAKRSR EKEDGTRNEA FSNQNPCVYE HNKETIVMQK SCKMVPYPPH 480 QQLDQNPPRI ESCRTHSFST ALNNIFHQEV EESSNMGTHL SNPSSLVTSL SSSREESPDK 540 TSLPMLFGMP STVSKLFTNI PTSDGDSWEL SSNLRPALSL PQMPIFASWT DA* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi11g03890.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014520084.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X4 | ||||
Swissprot | Q84Z02 | 1e-119 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A1S3VPU3 | 0.0 | A0A1S3VPU3_VIGRR; AP2-like ethylene-responsive transcription factor ANT isoform X4 | ||||
STRING | XP_007156691.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-109 | AP2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|