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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g03530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARR-B | ||||||||
Protein Properties | Length: 541aa MW: 60643.2 Da PI: 6.1245 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.5 | 1.2e-27 | 315 | 369 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++Wt+eLH++Fv+aveqL G+++A+P++ile+mkv+gLt+++v+SHLQkYR++ Vradi11g03530.1 315 KMKVDWTSELHKKFVKAVEQL-GIDQAIPSRILEIMKVEGLTRHNVASHLQKYRMH 369 5689*****************.********************************96 PP | |||||||
2 | Response_reg | 32.8 | 3.6e-12 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealk 91 vl+ d +++ + + + le +y +v ++ d eal + + +++ ++ ++ + + G+++l++ +++lp i+++ ++ +++ +++ Vradi11g03530.1 20 VLVLDGDRSSAAEIGEQLEAMDY-HVSTFYDENEALSAVSSSPegFHVAIVEVSTSSsLGGFKFLEN----AKDLPTIMISKNQCLNTTMKCIA 108 78999999999************.***************888888*******999998899988864....34799****************** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 +Ga +flsKp ++++l + Vradi11g03530.1 109 LGAVEFLSKPLSEDKLKN 126 **************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.85E-16 | 16 | 139 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 5.9E-18 | 16 | 153 | No hit | No description |
SMART | SM00448 | 6.6E-5 | 18 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 21.463 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.7E-9 | 20 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.13E-9 | 21 | 131 | No hit | No description |
PROSITE profile | PS51294 | 14.379 | 312 | 371 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-27 | 313 | 372 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.96E-18 | 314 | 371 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-25 | 315 | 370 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.4E-7 | 318 | 367 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MVCTANDLQG WKDFPKGLRV LVLDGDRSSA AEIGEQLEAM DYHVSTFYDE NEALSAVSSS 60 PEGFHVAIVE VSTSSSLGGF KFLENAKDLP TIMISKNQCL NTTMKCIALG AVEFLSKPLS 120 EDKLKNIWQH VVHRAFNSRA NGLSESLKPV KESVESVLQL QTGNEQDKTH KRTMSIDLEN 180 VSRFGDNDNE QSVCDKYPAP STPQLKHGTR LLDDGDCHEQ TNFSIEKESG EHDGECKSVE 240 TSCENLNAES TPQPTEPEET PIKEEEDFAD GSKGERAVSL NLQNEKFLSN ADGHTSPKKM 300 GVLNDSCEIK ANRKKMKVDW TSELHKKFVK AVEQLGIDQA IPSRILEIMK VEGLTRHNVA 360 SHLQKYRMHK RQSAPGEEDR KWHNQRDAMQ RNFYLQRPIM AYPPYHSNQT ISPAPIYPMW 420 GQPGSQTAAV QIWGPPAYPL WHPTESWNWK PYPGMHVDAW GCPLFPPPQA PGFPFNQNIP 480 GLHTPKPMDY RFSMPRSSFE HHPVATTVVD MTGSLVIQHH DAAQMDYALI LFIPLAKTQN 540 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-15 | 313 | 368 | 3 | 58 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g03530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014520921.1 | 0.0 | two-component response regulator-like APRR2 isoform X2 | ||||
Refseq | XP_022643257.1 | 0.0 | two-component response regulator-like APRR2 isoform X2 | ||||
Swissprot | Q6LA43 | 1e-127 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A1S3VRV6 | 0.0 | A0A1S3VRV6_VIGRR; two-component response regulator-like APRR2 isoform X2 | ||||
STRING | XP_007156636.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3566 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.5 | 1e-125 | ARR-B family protein |
Publications ? help Back to Top | |||
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