PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g01010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 466aa    MW: 51741.8 Da    PI: 5.4576
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g01010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.6e-36151072103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw e++n+fvv++  +fa+++Lpk+Fkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +g+k+ll+
  Vradi11g01010.1  15 FLSKTYDMVDDPSTDSVVSWGEHNNTFVVWNVPQFATDILPKHFKHNNFSSFVRQLNTYGFKKVDPDQ---------WEFANEGFLRGEKQLLK 99 
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i r+ks+
  Vradi11g01010.1 100 SISRRKSA 107
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-5611104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.94E-3312104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEGASWNSSV CVAPFLSKTY DMVDDPSTDS VVSWGEHNNT FVVWNVPQFA TDILPKHFKH  60
NNFSSFVRQL NTYGFKKVDP DQWEFANEGF LRGEKQLLKS ISRRKSAHIN GSQQPSQVQK  120
SAVRACVEVG KFGLEEEVEI LKRDKNVLMQ ELVRLRQKQQ VTDNQLQNVG QRMQSMEQRQ  180
QQMMSFLAKA MHSPGFLAQF VQQQNESKKH ITGANKKRRL HSQEKDNLTT NSLHSGLDGH  240
VVKYQSSINN AAKSLFRQIL QINNSTATQS SIKNPDVFLI DDIPSTIASD SSSSSTQVSN  300
VTLSTVPPVS ELTSMEVDSQ FPVNGMPSIS EVQSSPAVLG FCQSQGVETE SSLLNHNLNG  360
VEKNMAEIDV SSVLDGPHTV EAGYSSPDAD GISQLPDIDD EFWELFFRPS PLTGDAEEIK  420
FSTLGCGLTE DQGLPLEREN EKKNVDKMQH VDNLTKQMGL LASKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-241210717123Heat shock factor protein 1
5d5u_B3e-241210426129Heat shock factor protein 1
5d5v_B3e-241210426129Heat shock factor protein 1
5d5v_D3e-241210426129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g01010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521170.10.0heat stress transcription factor A-1b-like
SwissprotQ84T611e-139HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A1S3VS950.0A0A1S3VS95_VIGRR; heat stress transcription factor A-1b-like
STRINGXP_007157072.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-114heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]