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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g13190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 676aa MW: 77272.9 Da PI: 7.7077 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.1 | 4.4e-21 | 63 | 156 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak+ GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel Vradi10g13190.1 63 EFYSEFAKRSGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTefgAPEWRVTGFANHHNHELL 156 6**************9998877356667999*************99999999*******************9988888**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.1E-18 | 63 | 156 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.5E-21 | 279 | 370 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.186 | 554 | 590 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.5E-6 | 561 | 588 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.2E-5 | 565 | 592 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MMSEDAGSML VVYDDPSDQR SLSLDDASST EESPDETRLS LETTHDAIPY IGQRFATHDA 60 AYEFYSEFAK RSGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTST ESKPQRNRKS 120 SRCGCQAYMR ISKTTEFGAP EWRVTGFANH HNHELLEPNQ VRFLPAYRTI SDVDKNRILM 180 FAKTGISVHQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEEESL DLLRMCRNIK 240 EKDPNFKFDY TLDANNRLEN IAWSYASSIQ WYDIFGDAVV FDTTHRLTAF DMPLGIWVGI 300 NNYGMPCFFG CTLLRDETVR SFSWALKAFL GFMNGKAPQT ILTDQNICLK EALSTEMPTT 360 KHAFCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES VEDFDLGWRE MVCSFGLHSN 420 RHMVNLYSSR SLWALPFLRS HFLAGMTSTG QSKSINAFIQ RFLSAQTRLA HFVEQVAVAV 480 DFKDQTGEQQ TMQQNLQNVC LKTGAPMESH AATILTPFAF SKLQEQLVLA AHYASFPIED 540 GFLVRHHTKA EGGRKVYWAP QEGIISCSCH QFEFTGILCR HSLRVLSTGN CFQIPDGYLP 600 IRWRRISMPS SKLLQSAPND HAERVKLLQN MVSSLMTESA KSKERLDIAT EHVSILLSRL 660 REQPISLQGG RESQN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g13190.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014518871.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A1S3VKI6 | 0.0 | A0A1S3VKI6_VIGRR; protein FAR1-RELATED SEQUENCE 11 | ||||
STRING | XP_007148586.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Publications ? help Back to Top | |||
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