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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g11430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 899aa MW: 99102.9 Da PI: 7.5553 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.9 | 1.8e-18 | 336 | 435 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+l+ sd+++ grlvlpkk+ae++ ++++e+ l++ d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + e+ Vradi10g11430.1 336 FQKTLSASDAGRIGRLVLPKKCAETYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEG 427 99**************************555566778***************9989999999***9.********************766.677 PP ..EEEEE- CS B3 91 elvvkvfr 98 +lv+++++ Vradi10g11430.1 428 RLVMGFRK 435 67777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.37E-20 | 333 | 435 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-30 | 333 | 439 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.48E-22 | 334 | 435 | No hit | No description |
PROSITE profile | PS50863 | 11.138 | 336 | 437 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.4E-21 | 336 | 437 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-15 | 336 | 435 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.149 | 582 | 632 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.3E-12 | 587 | 629 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 899 aa Download sequence Send to blast |
MASASSSSSK LCFNSDCKEL RPERPKKGWR LRSGELAELC DRCGSAFEEG RFCEIFHSNA 60 SGWRSCETCR KRVHCGCIVS SHSFMLLDPG GIECYACARK NIIMPSNLPW PQSFSLQNRL 120 SDRLRDLSAK GWNQLAGSGP VPWKQAPSLF NSASSTDLIP DVPSLAELSN SFDKMYCNER 180 LPASALEKKS EDYTGLPVHW NVTICPREMK LMNGMRNDDK ASSCLNMCQQ PSSLKEESST 240 QPFGLPVPNS CQNERNGQLG VTGSHPQQTP PPPGKHFNGT MHLAPDSSGE AQVRNGRPRA 300 DARGRNQLLP RYWPRCTDLE LQQISIDSNS VITPLFQKTL SASDAGRIGR LVLPKKCAET 360 YFPPISQPEG LPLKILDAKG KEWIFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF 420 SRLEPEGRLV MGFRKASSAV PSDQDNETNK SGNGFSAHGE VELADPNSWS KVDKSGYIAK 480 EALGSKSLIS RKRKSGILGS KSKRLRIENE DLIELKITWQ EAQGLLRPPP SHIPSIVVIE 540 GFEFEEYEEF WKLCIVATFM LKIILQEAPV LGKPTIFTSD NVGEKIQWAQ CEDCLKWRKL 600 PASALLPSKW TCADNSWDPE RSSCSAAQEL TAEQLENLLP PCNSAIPKKM KAAKQDPDNA 660 EALEGLDTLA NLAILGEGEA LPASAQATTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC 720 NVCLTVKRRF RTLMLRREKK QSEKEAETTR KKQQQQHSQP LPSSEILLDE DSLPCSNTGD 780 SSPNQNKEGN DGSDDDPNRI KSSASPFKGQ IDLNIQPERE EELSPGSDSG GMMKLLHDAT 840 ERYLKQQTVN SGTGDSAGSQ SQLVGDAMRE DKLSNGVTHG SSSHSTDKEH AQSLSMNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 6e-62 | 314 | 439 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 489 | 494 | SRKRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g11430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014518411.2 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X1 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A1S3VJ83 | 0.0 | A0A1S3VJ83_VIGRR; B3 domain-containing protein Os07g0563300 isoform X1 | ||||
STRING | XP_007148240.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7738 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-147 | HSI2-like 1 |