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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g10130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 259aa MW: 29107.5 Da PI: 10.7041 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.1 | 1.1e-13 | 45 | 128 | 9 | 87 |
trihelix 9 aLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +L++a ++ +l+rg+l++++W++v++++ + ++ +r+ +qCk++++ ++k+yk +k++ ++ + + ss++p++++l+a Vradi10g10130.1 45 TLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSSSNGTLSSSWPFYERLDA 128 6777777778899********************99999****************************99999999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.3E-23 | 39 | 129 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MLAAGGDGAE EGLLGSFNKV EIWYSSRLGR ISHLVVCRSN EASSTLVDAW GRRYLELNRG 60 NLRQKDWQDV ADAVNALHGH TKKTHRTDVQ CKNRIDTIKK KYKIEKARVS SSNGTLSSSW 120 PFYERLDALI GPNFNAKKPP SSSPSPSPPV ALPLLPHRKN PSSSPAIAKL RQMVDLEKQR 180 MQFAKDLEVQ RMQMFMDTQV QLERIKRGKR SGSNVNTELV QIALWFAWSS IYNGLRMSKL 240 VPIAVQYRDI GTSLNLKM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g10130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003542983.1 | 1e-74 | trihelix transcription factor ASIL2 | ||||
Refseq | XP_028189803.1 | 1e-74 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A2P5QSH0 | 2e-90 | A0A2P5QSH0_GOSBA; Uncharacterized protein | ||||
STRING | GLYMA13G30280.1 | 4e-74 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1887 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 1e-34 | sequence-specific DNA binding transcription factors |