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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g10070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 367aa MW: 41367 Da PI: 9.0514 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.6 | 2.4e-27 | 88 | 138 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv++ve+LGG AtPk +l+lm+v+gL+++hvkSHLQ+YR+ Vradi10g10070.1 88 PRLRWTPELHHSFVHVVERLGG---ATPKLVLQLMNVQGLSIAHVKSHLQMYRS 138 8*******************99...89**************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.404 | 84 | 141 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-27 | 84 | 139 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.02E-13 | 86 | 139 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.2E-20 | 88 | 140 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-9 | 89 | 137 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MSEGHEIHNN EESSSGCSQK CSSFDLNAEA CSDDNTNGTT GDGYELTTNE NNIEKVNDEG 60 TSANGSSISR EGNARRGTVR QYVRSKMPRL RWTPELHHSF VHVVERLGGA TPKLVLQLMN 120 VQGLSIAHVK SHLQMYRSKK LDEAGQVLSQ TYRWNQNQKL RRSVILHESM SPQQHLKMGN 180 GGIILATQFN KHCHFPSLMD TPFPLSSSHT NDTDSRQQQW YINHQSFRKS IASGHIQAKD 240 TTTRPSKLLE EKSWIPLEIK SNHQSKFQKL AANVAPKNNG SQAVQLAEWS FVNKTSVREY 300 LSNKSNEPRN YSNNLKLDFD PPFRIKKDEQ EVPNLQLGLS YTVASDGGKM DHYRENQEIS 360 TKLSLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-15 | 89 | 140 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-15 | 89 | 140 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 7e-15 | 89 | 140 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-15 | 89 | 140 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-15 | 89 | 140 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-15 | 89 | 140 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-15 | 89 | 140 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-15 | 89 | 140 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-15 | 89 | 140 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-15 | 89 | 140 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-15 | 89 | 140 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-15 | 89 | 140 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g10070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-163 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014517457.1 | 0.0 | uncharacterized protein LOC106774946 | ||||
TrEMBL | A0A1S3VGW9 | 0.0 | A0A1S3VGW9_VIGRR; uncharacterized protein LOC106774946 | ||||
STRING | XP_007148039.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3012 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-31 | G2-like family protein |