![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi10g09050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 538aa MW: 56536.4 Da PI: 8.3959 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.5 | 7.1e-11 | 49 | 74 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C +G+rC+++H++ Vradi10g09050.1 49 DEADCTYYLRTGFCGFGSRCRYNHPR 74 6799********************96 PP | |||||||
2 | zf-CCCH | 35.2 | 2.1e-11 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rt tCk+G++Ck++H++ Vradi10g09050.1 95 QPVCQYYMRTRTCKFGSSCKYHHPR 119 689********************96 PP | |||||||
3 | zf-CCCH | 36.1 | 1.1e-11 | 140 | 164 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G++CkF+H+ Vradi10g09050.1 140 GEKECSYYVKTGQCKFGATCKFHHP 164 7899********************9 PP | |||||||
4 | zf-CCCH | 31.6 | 2.7e-10 | 407 | 429 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C ++a+ G Ck+G+ CkF H+ Vradi10g09050.1 407 SPCTHYAQHGVCKFGSACKFDHS 429 69********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.596 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 49 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-8 | 49 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 53 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.455 | 92 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-9 | 95 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.15E-5 | 95 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 97 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.718 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-6 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-9 | 140 | 164 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 140 | 165 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-4 | 144 | 163 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0041 | 403 | 430 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.737 | 404 | 431 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.26E-5 | 406 | 433 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-8 | 407 | 429 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 408 | 430 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 538 aa Download sequence Send to blast |
MEQYGRSSEG SRSDPSPEWA GPGAQTGLEE PMWQLGLGAA EESYPQRPDE ADCTYYLRTG 60 FCGFGSRCRY NHPRDRGMVV GAERAAGEYP ERVGQPVCQY YMRTRTCKFG SSCKYHHPRL 120 AGGAVTPVSL NYYGYPLRPG EKECSYYVKT GQCKFGATCK FHHPVPAGVQ IPAPSPVAPV 180 SPLPVPVPSP IYSTMQPPPG PSSQQIGVLV ARPPLLPGSL VQSPYGPVVL SPAMVPISGW 240 GPYQASGTGA VLPSGTPNVG SAQLYGMTQL PSSAAAYPGP YQLPGSLVGP SSSNQKEQAF 300 PERSNQQDYQ YYPKTGEVKG GPSYRHHPPP EMTAPKANVT LSPGGLPLRP FSEISIPHRG 360 EDGARVGKFV NGCIGTKTEV CGRIKLGINQ PLSPYIFSSS QHHQGASPCT HYAQHGVCKF 420 GSACKFDHSV GSLSYSPSAS SLADMPVAPY PVGSTIGTLA PSSSSSELRL ELYSGSNKES 480 VPSRMSSSSG MLTGSIGLTL STGGPISQSN SQPSAPSLDP LATVTSATSS NVSHTSS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi10g09050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022643038.1 | 0.0 | zinc finger CCCH domain-containing protein 34 isoform X1 | ||||
TrEMBL | A0A3Q0FH24 | 0.0 | A0A3Q0FH24_VIGRR; zinc finger CCCH domain-containing protein 34 isoform X1 | ||||
STRING | GLYMA15G10230.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06410.1 | 1e-128 | C3H family protein |