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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g08780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 749aa MW: 83537.6 Da PI: 7.2207 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 116.7 | 1.2e-36 | 105 | 180 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCe+d+se+k yhrrh+vC +++a++v+++g+ +r+CqqC++fh ls+fDe+krsCrr+L++hn rrr+k Vradi10g08780.1 105 RCQVPGCEVDISELKGYHRRHRVCLRCANATTVVLHGEPKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRK 180 6************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.6E-28 | 100 | 167 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.667 | 103 | 180 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.53E-33 | 104 | 181 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-27 | 106 | 180 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MEPQQSLPPM DDSEDPSSTW DFSYLLDFNL DEDHTINSLP FSSPFNDTPE IPNDRVRKRD 60 PRLTCSNFLA GRVPCACPEL DAKLEEEGLP GKKRPRTARA SSAARCQVPG CEVDISELKG 120 YHRRHRVCLR CANATTVVLH GEPKRYCQQC GKFHVLSDFD EGKRSCRRKL ERHNTRRRRK 180 PLVESGGDCS NLSNEINNIV GLPDHGDEPV PILISAPDAQ NVNSDSVVSL PVSGETRVNS 240 GNTSNSPSYC DNKSAYTSMC QTGRISFKLY DWNPAEFPRR LRHQAAKMHL QIFQWLASMP 300 VELEGYIRPG CTILTSFIAM PNIMWINLRK DSLEHVNKLV APGKMLSGRG TALVHLNDIV 360 FRVMKDGTSV TKVEVNLQTP RLHYVHPTCF EAGKPMEFVA CGSNLLQPKF QLLVSFSGKY 420 LKCEYCVPAP HNWTEENISC AFDNQLYKIY VPHTEESLSG PAFIEVENES GLSNFIPVLI 480 ADKETCSEMK ILQQKLDSSL LSNQFRSASG GSICSSCETF TLSHTSSDLL VDVAWLLKDT 540 TSENFDRVIT ASQIQRYCHL LDFLMCNEST VMLEKILPNL IILTESMKSN FAINTTSDVD 600 TRQLLNHIHN AQIAIFQKHQ KNGSIIVQPE MEGFKLAQGC SHDNKISVAI NSQGILSRAG 660 AKWGVLKNLT CSDKNERIPL LKRDIIMNVE ELPEIYGRGC LGRGLLTPRP AIFVMVSIAV 720 CLGVCVAVLH PGGVTELAVS VRRCLFNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 2e-43 | 102 | 187 | 2 | 86 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 178 | RRKLERHNTRRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g08780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014518645.1 | 0.0 | squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A1S3VK33 | 0.0 | A0A1S3VK33_VIGRR; squamosa promoter-binding-like protein 7 | ||||
STRING | XP_007147848.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6470 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.1 | 0.0 | squamosa promoter binding protein-like 7 |