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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g07270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 283aa MW: 32008.8 Da PI: 8.2219 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.7 | 3.7e-29 | 171 | 255 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+ Li++r+++e+++r +k+ Wee+s++m + g++rs+k+Ckekwen+nk+yk++ + kkr +s++cpyfd+l+ Vradi10g07270.1 171 RWPDVEVQSLITVRTSLEHKFRFMGSKGSIWEEISEAMYALGYNRSAKKCKEKWENINKYYKRTIGSGKKR-RLNSKSCPYFDELD 255 8****************************************************************999997.89999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.677 | 164 | 228 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-4 | 164 | 227 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 3.4E-21 | 170 | 255 | No hit | No description |
CDD | cd12203 | 5.32E-28 | 170 | 234 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
SFYLPTNNHS PSLFTSSQNP RAAIFFPFFF FYHYMDLFAA DHFPVPDHVA PFPDSGDLLF 60 PADLLSYRHN PQKLRPIRPL PSALNAHPRP PDPIASGSGH APSQESDSAL DAEDEEENDD 120 NSSASPEGNG PRKRRRKTVR KLEGFVKNLV TKGEVEVNAH KEFNSDPSKS RWPDVEVQSL 180 ITVRTSLEHK FRFMGSKGSI WEEISEAMYA LGYNRSAKKC KEKWENINKY YKRTIGSGKK 240 RRLNSKSCPY FDELDILYRN GLLSIGNALS NTTDAPQIEQ KE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 135 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g07270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_007147613.1 | 6e-83 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11112 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 1e-33 | Trihelix family protein |