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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g05910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 707aa MW: 78609.9 Da PI: 6.7016 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52 | 1.2e-16 | 27 | 79 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++q+ +Le++ + +++p++++r++LA+++gL+ rq+k+WFqN+R++ k Vradi10g05910.1 27 YKRLSSSQTSRLERFIKDCPHPDEAQRRQLAAEIGLEPRQIKFWFQNKRTQIK 79 567899*******************************************9988 PP | |||||||
2 | START | 127.9 | 1.2e-40 | 225 | 446 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 +a +a++elv+++ +ep+W kss s++g+ +l + +k ++ea ++sg+v ++ +lv +ld+ +W + ++ kae Vradi10g05910.1 225 VAATAMDELVRLVRINEPFWIKSS-SPDGKLCLLLENYQKMfpktkhfkgpnVRIEATKESGIVSINSLQLVDMFLDSD-KWVNLFPtmvsKAE 316 6889********************.4555444444433333444444677889**************************.88887777777*** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 t++vi+ g galqlmv+++ +lsp v R+f f+R+++q ++++vi+dvS ds q++p s+ + ++pSg+li++++ng + vtwv Vradi10g05910.1 317 TVKVIERGlpgnrsGALQLMVQQMHVLSPFVQpREFQFLRFCQQ-IEEGLVIADVSFDSFQQKP---SIFQSWKHPSGCLIQEMPNGCCMVTWV 406 *****************************8766***********.9999**********99988...7************************** PP E-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ehv++++++ h l++ ++ +g+a ga +w lqr ce+ Vradi10g05910.1 407 EHVEVDDKIQiHPLYKDIIVKGVAYGAERWIMELQRMCER 446 ********988***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 12 | 83 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.15E-16 | 16 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.791 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-17 | 23 | 85 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.6E-14 | 26 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.77E-16 | 29 | 82 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 56 | 79 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.691 | 215 | 449 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.02E-30 | 217 | 448 | No hit | No description |
CDD | cd08875 | 3.43E-96 | 219 | 445 | No hit | No description |
SMART | SM00234 | 1.8E-31 | 224 | 446 | IPR002913 | START domain |
Pfam | PF01852 | 4.1E-34 | 225 | 446 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.1E-8 | 278 | 411 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.4E-11 | 478 | 702 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MDSSMASAGA SADEGSQNHN NGRKTSYKRL SSSQTSRLER FIKDCPHPDE AQRRQLAAEI 60 GLEPRQIKFW FQNKRTQIKN QHERADNTAL RVENDRIHTE NVTMQEALKS MLCPSCGGPP 120 CLEGDREHAI HNMRLENMHL KEEHEKVSRL LSRYLESQML PPDQFQQGFF PIIGSSSNAA 180 ALGNPLNQVI GGSSSHDPNL ALHMMDGGHN FLASEGIEKN LMAKVAATAM DELVRLVRIN 240 EPFWIKSSSP DGKLCLLLEN YQKMFPKTKH FKGPNVRIEA TKESGIVSIN SLQLVDMFLD 300 SDKWVNLFPT MVSKAETVKV IERGLPGNRS GALQLMVQQM HVLSPFVQPR EFQFLRFCQQ 360 IEEGLVIADV SFDSFQQKPS IFQSWKHPSG CLIQEMPNGC CMVTWVEHVE VDDKIQIHPL 420 YKDIIVKGVA YGAERWIMEL QRMCERFAAF YLEKIPDHDA AGVINSLEGR RSIMNFSHRM 480 LKIFCESITM ADGLDFPLCD LVNTSGVRVS IRESKINGQP SGMIVAAATS IWLPIHYMKV 540 FEFFLDDKNR AQWDVLTCGN QAHKVANISN GIHPGNCVSV IRPFIPSENN ALILQESFTT 600 PMGSYVIYAP TDVATMTAAI MGENSSMLPV LPSGFVICPD GEPNSAMGAF DGADTERSGG 660 SLLTVAFQIL ASADGRNMPN RKAGAAVNSL LTSTILRVRD AFNCNN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g05910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014517364.1 | 0.0 | homeobox-leucine zipper protein HDG11-like | ||||
TrEMBL | A0A1S3VGX7 | 0.0 | A0A1S3VGX7_VIGRR; homeobox-leucine zipper protein HDG11-like | ||||
STRING | XP_007147460.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |