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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g05570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 125aa MW: 13980.9 Da PI: 6.768 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.5 | 7.9e-16 | 12 | 74 | 34 | 99 |
SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 34 ktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ +++ ++g+ W+vk+ + g+ v+++GW+eF+k+++L++ Df+vF++dg+++f +vk+f k Vradi10g05570.1 12 IQMEIRNeQDGKHWDVKV--EIIEGGLVFKSGWQEFAKEKKLEDCDFLVFEYDGKTTF--NVKIFGK 74 45666665899*******..99999***************************997777..9**9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0092 | 1 | 75 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.464 | 1 | 75 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.37E-12 | 11 | 72 | No hit | No description |
Pfam | PF02362 | 5.6E-13 | 13 | 74 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-16 | 19 | 77 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-16 | 20 | 77 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MQVGKHCVCG SIQMEIRNEQ DGKHWDVKVE IIEGGLVFKS GWQEFAKEKK LEDCDFLVFE 60 YDGKTTFNVK IFGKTGCRKV AAPPKVVPIV NLEEDSDEHS NEIQNNGVRK RPLPSSKTNV 120 KSEG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g05570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-156 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022642858.1 | 2e-70 | putative B3 domain-containing protein At5g66980 | ||||
TrEMBL | A0A3Q0FGJ0 | 4e-69 | A0A3Q0FGJ0_VIGRR; putative B3 domain-containing protein At5g66980 | ||||
STRING | XP_007147158.1 | 6e-42 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7185 | 15 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 2e-10 | B3 family protein |