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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g05520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 557aa MW: 62568 Da PI: 7.985 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 33.6 | 1e-10 | 96 | 143 | 22 | 69 |
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +++ ++ W++vs+k+ e gf++s+++Ckek+e+ ++++ ++ + k Vradi10g05520.1 96 MENCFPEHTWDHVSRKLGELGFKKSAEKCKEKFEDESGYFDNVSNYGK 143 56788899********************************99877655 PP | |||||||
2 | trihelix | 96.9 | 1.8e-30 | 418 | 503 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+++evlaLi++r ++++ +g+ k+plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql Vradi10g05520.1 418 RWPRDEVLALINLRCTSVSNSEekEGNNKGPLWERISQGMSEVGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLNSRTCPYFHQL 503 8***********997655555512689*********************************************8.89999*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.4E-20 | 417 | 503 | No hit | No description |
CDD | cd12203 | 1.57E-23 | 417 | 484 | No hit | No description |
PROSITE profile | PS50090 | 6.353 | 418 | 477 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MCSWPCSVTV CKRPLHSKRL HVLAAVPVRR HCIPLYQLKI PILKSSVPLS ASFHVSCHPY 60 AVNYTIVTVT HSYSLPLSFP RASTSSLTCP RIRSTMENCF PEHTWDHVSR KLGELGFKKS 120 AEKCKEKFED ESGYFDNVSN YGKNNYRFLS ELEELCQNPD SAGGGGGDCD GDDGIVRSEK 180 TLLHLGADNM GHRQCDGTDD KVVVEKSKER KRKRRDRFEM FKGFCESFVN KMMAQQEEIH 240 NRLLEDMVKR DQEKFAREEA WKKQEMERMN KELDIMAQEQ AIAGDRHATI IEFLKKCATT 300 TSTTSQNANG SSLPNRSLLH SLNPNSPSNE DNNLDPTPTL LNHDQTKLLR AENPSSSETL 360 LQVPSSSNSS PTPHNPSSSL NSQNNTIPLE SNSVSTYKTT STTPPGRTEN SKDDVGRRWP 420 RDEVLALINL RCTSVSNSEE KEGNNKGPLW ERISQGMSEV GYKRSAKRCK EKWENINKYF 480 RKTKDVNKKR SLNSRTCPYF HQLSCLYGQG KIVAAQSERE GNYMSPTANS GQVPPDVDDE 540 DESSHVGSGG LDHYAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 209 | 214 | RKRKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g05520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014517158.1 | 0.0 | trihelix transcription factor GTL2 | ||||
Swissprot | Q8H181 | 4e-75 | GTL2_ARATH; Trihelix transcription factor GTL2 | ||||
TrEMBL | A0A1S3VFL9 | 0.0 | A0A1S3VFL9_VIGRR; trihelix transcription factor GTL2 | ||||
STRING | XP_007147154.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 7e-72 | Trihelix family protein |
Publications ? help Back to Top | |||
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