PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g03890.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 906aa    MW: 100482 Da    PI: 7.1343
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g03890.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.66.3e-20338438199
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kvl+ sd+++ grlvlpk +ae++  ++++ e++ l+++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F++++  ++
  Vradi10g03890.1 338 FEKVLSASDAGRIGRLVLPKACAEAYfpSISQSEGVPLRMQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQTMQLRAGDTVTFSRID-PGG 429
                      99**************************777789999***************9989999999***9.********************987.899 PP

                      ..EEEEE-S CS
               B3  91 elvvkvfrk 99 
                      +lv++++r+
  Vradi10g03890.1 430 KLVMGFRRA 438
                      899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-30334447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-20336437IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-23336437No hitNo description
PROSITE profilePS5086310.969338439IPR003340B3 DNA binding domain
PfamPF023627.0E-17338438IPR003340B3 DNA binding domain
SMARTSM010191.5E-22338439IPR003340B3 DNA binding domain
PROSITE profilePS5105014.17600650IPR011124Zinc finger, CW-type
PfamPF074962.1E-10605647IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MGSDICVVNG SCTHEWRKGW PLRSGGFAQL CCKCGFMEEW KGDIHEPLSA YENSVFCSKF  60
HHQQTGWRDC NFCNKPIHCG CMVSKSLFEH LDFGGIGCVS CVNTSQLSTM RNIENPNGPV  120
SLIKNNSSDR PSRSEGRLFA RGVDEGKLMQ FCKIIEASES SRWNNAQKDG TISRHGNNNQ  180
EAKCSFGEGD IGFSKVVKPS VQPLTFATLE NNRSPWEIKN IHEANVQPSL SMYLGNGSGN  240
NSVLPSAGEV VEGRLERKTS PPFHQGQRTR PIFPKPVKSG LTMNVEIDKG TNSQSRVARP  300
PADGRGKNQL LPRYWPRITD QELERLSGDL KSTVVPLFEK VLSASDAGRI GRLVLPKACA  360
EAYFPSISQS EGVPLRMQDV KGNEWTFQFR FWPNNNSRMY VLEGVTPCIQ TMQLRAGDTV  420
TFSRIDPGGK LVMGFRRASN SADTQDTSTS AQSNSAKGAT SAGTENLPSG SNHANLLLSM  480
KGNVEPKFNG QREHPLLGTG TSGLLITETN GMMTNNTSLQ RKVSVLEKKK TRNIGPKSKR  540
LLIDNEDARE LKLTWEEAQD LLRPPPSVKP SIVTIEDQVF EEYDEPPVFG KRTIFSTCSS  600
GVKEQWAQCD DCSKWRKLPV DALLPANWTC FDNAWDSRRC SCTVPEELSS GELESLLKTD  660
KDFKKRRSDE KSKSIQEYEA SGLEALASAA ALGENLVDTA ESSAGPTTKH PRHRPGCSCI  720
VCIQPPSGKG RHKPTCACNV CLTVKRRFKT LMLRKKKRQS EREAEAAQKD QVLPKEESDT  780
NETSRDDGTQ LEKEVVGLSR SQAEVGESSA AGQIDLNSDP NREDMVDLSA IFFCESEHEY  840
MNQNDPRSYN NELQNGENSS LHTPQSNGEG QRHLSDLRSF ASIMWNQERR DEEDSEPNQN  900
QNNLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-683164452131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1744755KRRFKTLMLRKK
2744757KRRFKTLMLRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g03890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518887.10.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_014518889.10.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_014518890.10.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_014518891.10.0B3 domain-containing transcription repressor VAL1 isoform X1
TrEMBLA0A1S3VKT50.0A0A1S3VKT5_VIGRR; B3 domain-containing transcription repressor VAL1 isoform X1
STRINGXP_007146893.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2