PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi10g02130.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HSF

Protein Properties

Length: 499aa MW: 56235.5 Da PI: 5.7574

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi10g02130.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	104.6	8e-33	19	127	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.........XTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.........kekiweFkhksF 86 Fl k+y++++d+++++++sws+ + sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+Yg + +++ +k+ +++ weF++++F Vradi10g02130.1 19 FLLKTYDMVDDPSTNDIVSWSSCNASFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGTSFIQEGDKRIFFkyfegfrkiHPERWEFANDEF 112 9*************************************************************99987744367766665449****** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkk 101 k++k+ll++i+r+k Vradi10g02130.1 113 VKDQKHLLKNIHRRK 127 ***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	3.45E-33	15	126	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.0E-50	15	126	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.9E-35	15	126	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.0E-27	19	126	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-15	19	42	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-15	57	69	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-15	70	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MDGAPPSAAA AAAGGPAPFL LKTYDMVDDP STNDIVSWSS CNASFVVWNP PEFARLLLPT 60 YFKHNNFSSF IRQLNTYGTS FIQEGDKRIF FKYFEGFRKI HPERWEFAND EFVKDQKHLL 120 KNIHRRKPIH SHSHPPGSIV DPERAAFEEE IEKLSREKTS LESNIHNFKQ HQSTAKLQLE 180 DFLQRLETTE KRQKQLLNFF EKALQNPSFV EHLSRKIESM DLSAYKKRRL PQADHVQPVA 240 ESSFVDSHSN FRMEFGNIFH QDFSNKLRLE LSPAVSDMNL VSRSTQSSNE DGESPQKKLS 300 EVEPKGVQTR TSLTFAPETL ELADTGASFT FKMDTCLPRK ATTAENSKLI SLEPSSEEGD 360 SCQLNLTLAS CPVQVNRNSY SARSPQIDCQ EIGKLAESRF FASVKESESG VSSNQNLAAE 420 ATNLASPQEA PSNNQVNPAP PDRVNDVFWE QFLTERPGCS DNEEAISNYR ANPHDEQDEG 480 RAVHGISRNI KNMDQLTL*

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MDGAPPSAAA AAAGGPAPFL LKTYDMVDDP STNDIVSWSS CNASFVVWNP PEFARLLLPT  60
YFKHNNFSSF IRQLNTYGTS FIQEGDKRIF FKYFEGFRKI HPERWEFAND EFVKDQKHLL  120
KNIHRRKPIH SHSHPPGSIV DPERAAFEEE IEKLSREKTS LESNIHNFKQ HQSTAKLQLE  180
DFLQRLETTE KRQKQLLNFF EKALQNPSFV EHLSRKIESM DLSAYKKRRL PQADHVQPVA  240
ESSFVDSHSN FRMEFGNIFH QDFSNKLRLE LSPAVSDMNL VSRSTQSSNE DGESPQKKLS  300
EVEPKGVQTR TSLTFAPETL ELADTGASFT FKMDTCLPRK ATTAENSKLI SLEPSSEEGD  360
SCQLNLTLAS CPVQVNRNSY SARSPQIDCQ EIGKLAESRF FASVKESESG VSSNQNLAAE  420
ATNLASPQEA PSNNQVNPAP PDRVNDVFWE QFLTERPGCS DNEEAISNYR ANPHDEQDEG  480
RAVHGISRNI KNMDQLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-17	1	126	12	129	Heat shock factor protein 1
5d5v_B	2e-17	1	126	12	129	Heat shock factor protein 1
5d5v_D	2e-17	1	126	12	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi10g02130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014517147.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-160	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A1S3VG08	0.0	A0A1S3VG08_VIGRR; heat stress transcription factor A-5
STRING	GLYMA05G28460.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-162	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]