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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 240aa MW: 26775.7 Da PI: 8.2744 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85.8 | 4.3e-27 | 82 | 132 | 2 | 52 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 prlrWtpeLHe Fve+ve LGG++kAtPk+il++m+vkgL ++h+kSHLQ Vradi10g00100.1 82 PRLRWTPELHEYFVEVVEGLGGKNKATPKSILQMMHVKGLRISHIKSHLQE 132 9*************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 78 | 132 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.24E-13 | 80 | 132 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.7E-20 | 81 | 132 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-6 | 83 | 132 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MVSEPDEQQY EKGYSWLGML PLEENASAGG RVYQCGRNSP LKWEIVRISS VLLLLLLHDV 60 KVKNMKNSKK TGVRKYQKSE NPRLRWTPEL HEYFVEVVEG LGGKNKATPK SILQMMHVKG 120 LRISHIKSHL QEMEGNEDGK DLLMCSNCSS QRSQETKFRA SKYDMGIVTQ EIRPSENKGL 180 SQTSETDYDL NQVLCCKCCK VVRQGGVVGD LVGGRGSVGG FVDEPGEGGI KVKQEHDML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-16 | 83 | 132 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-16 | 83 | 132 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-16 | 83 | 132 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-16 | 83 | 132 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g00100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 6e-87 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014517177.1 | 1e-90 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A1S3VG37 | 3e-89 | A0A1S3VG37_VIGRR; putative Myb family transcription factor At1g14600 | ||||
STRING | XP_007146259.1 | 1e-70 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9186 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 9e-23 | G2-like family protein |