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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi09g09920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 827aa MW: 90339.1 Da PI: 5.9404 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.1 | 4.6e-21 | 132 | 187 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Vradi09g09920.1 132 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 187 688999***********************************************999 PP | |||||||
2 | START | 207.5 | 5.2e-65 | 339 | 564 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 ela++a++elvk+a+ +ep+Wv+ + e+ n +e+ ++f++ + + +ea+r+ g+v+ ++ lve+l+d + +W e+++ + +t Vradi09g09920.1 339 ELALAAMDELVKMAQTGEPLWVRNVeggrEIMNHEEYARTFTPCIGlrpngFVSEASRENGMVIINSLALVETLMDAN-RWAEMFPciiaRTST 431 5899*************************************99998********************************.*************** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwv 167 +evis+g galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+ds ++ + s +v +++lpSg+++++++ng+skvtwv Vradi09g09920.1 432 TEVISNGingtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDSIRESSGaPSTFVNCRRLPSGCVVQDMPNGYSKVTWV 525 *************************************************************9999999************************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 eh++++++++h+++r+ ++sg+ +ga++wvatlqrqce+ Vradi09g09920.1 526 EHAEYDESQIHQVYRPSLNSGMGFGAQRWVATLQRQCEC 564 *************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.71E-20 | 118 | 189 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 119 | 189 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 129 | 189 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.9E-18 | 130 | 193 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.34E-18 | 131 | 189 | No hit | No description |
Pfam | PF00046 | 1.4E-18 | 132 | 187 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 164 | 187 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.059 | 330 | 567 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.06E-34 | 331 | 564 | No hit | No description |
CDD | cd08875 | 9.73E-124 | 334 | 563 | No hit | No description |
SMART | SM00234 | 1.8E-48 | 339 | 564 | IPR002913 | START domain |
Pfam | PF01852 | 2.0E-56 | 339 | 564 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.4E-21 | 591 | 819 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 827 aa Download sequence Send to blast |
MSFGGFLENK SGSGAARHDL LDIPYNNVTT TNHTNTNEDD RMPFGAISQP RLVTTTTPTL 60 AKSMFNSPGL SLALQQTNID GQEDVNRMVE NSFEPNGLRR SREEEHESRS GSDNIDGASG 120 DEQDAADNPP RKKRYHRHTP QQIQELEALF KECPHPDEKQ RLELSKRLCL ETRQVKFWFQ 180 NRRTQMKTQL ERHENTLLRQ ENDKLRAENM SIRDAMRNPM CSNCGGPAII GEISLEEQHL 240 RIENARLKDE LDRVCALTGK FLGRPVSSLP NSSLELGVGG NGFGGISIGT TLPLGQDFGM 300 GMSMSVSNNP LAMVSPSSTR PTSVVGGFDR SMERSMFLEL ALAAMDELVK MAQTGEPLWV 360 RNVEGGREIM NHEEYARTFT PCIGLRPNGF VSEASRENGM VIINSLALVE TLMDANRWAE 420 MFPCIIARTS TTEVISNGIN GTRNGALQLM HAELQVLSPL VPVREVNFLR FCKQHAEGVW 480 AVVDVSIDSI RESSGAPSTF VNCRRLPSGC VVQDMPNGYS KVTWVEHAEY DESQIHQVYR 540 PSLNSGMGFG AQRWVATLQR QCECLAILMS SAAPSRDHSA ITAGGRRSMV KLAQRMTNNF 600 CAGVCASTVH KWNKLNPGNV DEDVRVMTRK SVDDPGEPPG IVLSAATSVW LPVSPQRLFD 660 FLRDERLRSE WDILSNGGPM QEMAHIAKGQ DHGNCAINSS QSSMLILQET CIDEAGSLVV 720 YAPVDIPAMH VVMNGGDSAY VALLPSGFAI VPDGPGSRGS QNGPTAATNG GDNGAARVSG 780 SLLTVAFQIL VNSLPTAKLT VESVETVNNL ISCTVQKIKA ALHCES* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi09g09920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014516480.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Refseq | XP_014516481.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Refseq | XP_022641691.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A1S3VDP6 | 0.0 | A0A1S3VDP6_VIGRR; homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
STRING | XP_007134961.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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