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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi09g08770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 278aa MW: 31195.8 Da PI: 7.7093 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.5 | 6.1e-41 | 164 | 241 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrr La+hn+rrrk+++ Vradi09g08770.1 164 VCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRXLAGHNKRRRKTHP 241 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.3E-33 | 161 | 226 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.607 | 162 | 239 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.84E-38 | 163 | 243 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.7E-29 | 165 | 238 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MEAQLEGKNQ YLYGPVVPEM KSVGKRSLEW DLNDWKWDGD LFTATQLNSV PSDCTSRQLF 60 PADPEILAAG DASNSLSSSY DDVNLVEGRR ELEKRRRGVA DEPNGNNQDW RYCYVSTPIG 120 GVEMNDGAGS LNLNLGVQVY PIIEGEEKSG KKTKITGSTL NRAVCQVEDC RADLSNAKDY 180 HRRHKVCDMH SKASKALVGN VMQRFCQQCS RFHVLQEFDE GKRSCRRXLA GHNKRRRKTH 240 PDASVVNDGS VNEEKGSSYL LMSLLRILSN MHREFVC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-31 | 164 | 238 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 239 | KRRRKTH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi09g08770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-151 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014501154.1 | 1e-175 | squamosa promoter-binding-like protein 1 isoform X1 | ||||
Refseq | XP_014501155.1 | 1e-175 | squamosa promoter-binding-like protein 1 isoform X2 | ||||
Swissprot | Q9SMX9 | 9e-65 | SPL1_ARATH; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A0L9T6P9 | 1e-177 | A0A0L9T6P9_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3U559 | 1e-173 | A0A1S3U559_VIGRR; squamosa promoter-binding-like protein 1 isoform X2 | ||||
TrEMBL | A0A1S3U581 | 1e-173 | A0A1S3U581_VIGRR; squamosa promoter-binding-like protein 1 isoform X1 | ||||
STRING | XP_007138555.1 | 1e-168 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 2e-63 | squamosa promoter binding protein-like 1 |
Publications ? help Back to Top | |||
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