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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi09g07980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 204aa MW: 23450.5 Da PI: 7.9708 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.3 | 1.3e-15 | 19 | 94 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergf.erspkqCkekwenlnkrykkikegekkr 71 Wt+qe+ +Li+a++e++ +l+rg l+ ++Weev+ + + + +s+ qC++k+e+l++r++++k++ Vradi09g07980.1 19 WTHQETVHLIRAYQEKWYALKRGPLRHNQWEEVAVIVaarcgYDLAYpAKSALQCRHKMEKLRQRHRAEKKNVTAT 94 **********************************9998666655566678*******************9987764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.2E-15 | 18 | 107 | No hit | No description |
PROSITE profile | PS50090 | 6.04 | 18 | 81 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MATPNDAVSP TKKPQPIPWT HQETVHLIRA YQEKWYALKR GPLRHNQWEE VAVIVAARCG 60 YDLAYPAKSA LQCRHKMEKL RQRHRAEKKN VTATLRPAAW QYNALMEDLE CGPLPISALA 120 PFRNDTDSDP DDDGTYRNGN DGDESFVKSK SINCTLGERP VRMRNGERGF LRERSEEERD 180 EIVKSIMIEI SSEWFLLWKS PQN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi09g07980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014515082.1 | 1e-136 | trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A1S3VA48 | 1e-135 | A0A1S3VA48_VIGRR; trihelix transcription factor ASIL1 | ||||
STRING | XP_007134090.1 | 1e-114 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10087 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 3e-25 | Trihelix family protein |