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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi09g05290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 204aa MW: 23571.8 Da PI: 10.305 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 45.3 | 2.4e-14 | 65 | 93 | 49 | 77 |
EEETTT--SS--S-STTTT-------S-- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkq 77 fh +sefD++krsCrrrLa+hnerrrk++ Vradi09g05290.1 65 FHVVSEFDDSKRSCRRRLAGHNERRRKSS 93 9**************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 10.938 | 3 | 92 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.22E-10 | 64 | 94 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.7E-8 | 65 | 91 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MVILHSGIGT CTAVMMVVVT FQRATIRERG GVMEELRVGV AGARKRRRLG WFRGVRWRGA 60 TWRWFHVVSE FDDSKRSCRR RLAGHNERRR KSSHLSVTRS SRQGKNNTIH YISQLRYKEK 120 QPMRWIGCAL SLLSFGSSDA DLSTRCSAAL LELIAENRAA LMTRQQEEHV YVVGHHDDDA 180 VDEEEQEFVE SNYFPQHMFF QTQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 47 | RKRRR |
2 | 44 | 48 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi09g05290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 3e-76 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014515428.1 | 9e-72 | squamosa promoter-binding-like protein 7 isoform X1 | ||||
TrEMBL | A0A1S3VAQ5 | 2e-70 | A0A1S3VAQ5_VIGRR; squamosa promoter-binding-like protein 7 isoform X1 | ||||
STRING | XP_007134547.1 | 1e-44 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9613 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 2e-11 | squamosa promoter binding protein-like 3 |