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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi09g05000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 866aa MW: 99143 Da PI: 8.1388 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 23.3 | 2.2e-07 | 43 | 133 | 7 | 90 |
FAR1 7 AkevGFsvrkskskks.......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Ake GF + + +s++s +rn++ t + C ++gk + k+ e +++ +++ +++C +l+ k k + w v+ + HnHel Vradi09g05000.1 43 AKENGFVLIILRSETStkptrttRRNQRKTFVILGCDRSGKYRGLYKN-ELSQKVNSTRKCECPFRLRGKALKkAEGWTVKVMCGCHNHELE 133 77788888777777776666444666666666677********99999.8899999999999999999998777999*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-5 | 43 | 133 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.0E-22 | 245 | 341 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50802 | 11.253 | 679 | 814 | IPR003323 | OTU domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 866 aa Download sequence Send to blast |
MSKEVNEQIV GATNNSVDCS DAFNTTEIFP SRDAMLNWAR DVAKENGFVL IILRSETSTK 60 PTRTTRRNQR KTFVILGCDR SGKYRGLYKN ELSQKVNSTR KCECPFRLRG KALKKAEGWT 120 VKVMCGCHNH ELEETLVGHP YAGRLSAEEK SLVDDMTKNM MKPKDILLTL KDYNMDNVTT 180 IKQIYNARHA YRSSQKGLEM QYLLKLLERE RYVYWHRKVD DSNVIRDIFW THPDAIKLLG 240 AFNTVLIIDS IYTTTRYPLP LLEIVGVTST ELTFSVAFAF VESELADNFT WALQKLRGLI 300 VKDEDIPQVI VTNRDISLMN AVQVVFPSSC NLLCRSHINK NVKSKCMSIV HPKEKQELVM 360 NAWDVVVNSS NESEYMQRLA LFEKVCSGFP NFGEYVKNMW LIPHKEKFVT SWTNQVMHLG 420 NTTTDRVEST NCKLKNLLQD SKEDMCSYWD AMNDMITLQH TEIKLSFEKS INVVDHMHNT 480 PLYIKLQGLV SWSALSHITD EYDRVKAVGT DSSKCYCIVR TTHGLPCACE LAKYSTMCHP 540 VPLEAIHVHW KKLNFIDGGM NDEEYELSLQ PELDALLKRF QELDCAGKLV LKAKLHELAF 600 PDTTSKCPTP TVVRIKGAAK RDRSIHSDIS QWGHVDAMRP THSGSSSCPS SHQLVHDSKR 660 RRVLSMMDQF PIQIHPFIEE IIDVKADSNC GYRAVAAQLG MGEESWALVR QDLIRELQQW 720 QDIYAKLFGS NDRVAELRQS LYVDKETSIK KWMTIPDMGY VIASRYNVVL VALSLKESMT 780 FFPLRGRPPL SESRHRLIAI GLVHDCHFVQ VALKAESPLP PTALQWSRYC SAESRSWETS 840 YVIRMEHFRS LFPQKRNDYV NVIGD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 658 | 662 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi09g05000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014516402.1 | 0.0 | PKS-NRPS hybrid synthetase CHGG_01239-like | ||||
Refseq | XP_014516403.1 | 0.0 | PKS-NRPS hybrid synthetase CHGG_01239-like | ||||
TrEMBL | A0A1S3VDX1 | 0.0 | A0A1S3VDX1_VIGRR; PKS-NRPS hybrid synthetase CHGG_01239-like | ||||
STRING | XP_007139082.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF180 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 1e-15 | FAR1 family protein |