![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi09g02750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 240aa MW: 26126.7 Da PI: 10.6592 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 35.9 | 2e-11 | 12 | 77 | 22 | 86 |
trihelix 22 rrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 ++g+lk+++W+ev++ + ++ ++ +qCk++++ ++k+yk +k+ + s s++p+fd+l+ Vradi09g02750.1 12 NKGNLKQKHWKEVADIVsgreDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAG---SISKWPFFDRLD 77 57899************854334444556679*****************99986...7889******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.5E-17 | 12 | 79 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MMQSCGIVVL ENKGNLKQKH WKEVADIVSG REDYTKAPKT DIQCKNRIDT VKKKYKSEKA 60 KIAAGSISKW PFFDRLDKLI GPSAKIPGAG GSSGTAGTSA AGNSILQSHK VPLGIPVGVR 120 DGVNQYHRPQ RPAQQQPQPV PLKNQKIQFR RRGPPLESDS DERGASSPAS SDSFPPESFE 180 RKRPRVMSSN AGKGSEGRRR AKGWGSACIE VILISDRTLK FNTALTDYQT LSWANLGDI* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi09g02750.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441369.1 | 1e-115 | PREDICTED: trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 3e-38 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A0L9VQ08 | 1e-113 | A0A0L9VQ08_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SZD6 | 1e-113 | A0A0S3SZD6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007135401.1 | 1e-98 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7919 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G14180.1 | 1e-29 | sequence-specific DNA binding transcription factors |