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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi09g02700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 458aa MW: 52483 Da PI: 8.5888 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.4 | 4e-06 | 430 | 450 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++ r G C +Gd+CkF+H+ Vradi09g02700.1 430 VCKHYPR-GRCYFGDNCKFIHD 450 5******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF68906 | 5.68E-8 | 83 | 128 | No hit | No description |
Gene3D | G3DSA:1.10.720.30 | 1.6E-9 | 84 | 128 | IPR003034 | SAP domain |
SMART | SM00513 | 6.1E-4 | 93 | 127 | IPR003034 | SAP domain |
Pfam | PF02037 | 8.8E-10 | 93 | 127 | IPR003034 | SAP domain |
PROSITE profile | PS50800 | 10.306 | 93 | 127 | IPR003034 | SAP domain |
PROSITE profile | PS50103 | 14.849 | 425 | 452 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0063 | 426 | 451 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-7 | 427 | 450 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-6 | 429 | 452 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MANKDSPMEL YEISTESEGS DSDSDWEDSG EDSDYESLEE SHSKFSNLSL KHKAKARFIE 60 EKDRGEEELV VTASVNDGEN FGKVQKLIEE GLLEKLKVDE CKLYLRKNGL RLTGNKDTLI 120 ERIREHLEIL NGGEKKYPPS SFVLNCKGDA CTGDVVLFEQ NVYEMFNIAS RSASGQPCGK 180 RIVAGRIVKE SYGAAKQQHT FTIEVLWSKG EKPLPPLYPL LIKGRNLYRL KTLRQKWEDE 240 AERKKILMEK HSRGSLARAY REERIQEKEK RKNIKENRIS KIEARNQRQS NSHITRPQYQ 300 PQGTNVVINP ENPEFPSRNS DLSVNIMKER YCILNNPAAT FGGTSFGVQS MHRNHTSDFR 360 NTFDIGRVRG AETGANYYAD PHFRENLPRF VNCHPNMAEM GTHHRIPLAN ANHSHPFMVP 420 NRESFKINQV CKHYPRGRCY FGDNCKFIHD LRDKGNA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi09g02700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014516081.1 | 0.0 | zinc finger CCCH domain-containing protein 62 | ||||
Swissprot | Q338N2 | 8e-76 | C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62 | ||||
TrEMBL | A0A1S3VCJ7 | 0.0 | A0A1S3VCJ7_VIGRR; zinc finger CCCH domain-containing protein 62 | ||||
STRING | GLYMA16G01296.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11652 | 22 | 24 |
Publications ? help Back to Top | |||
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