PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g01460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 349aa    MW: 38077.1 Da    PI: 6.6087
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g01460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.57.8e-18238272135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Vradi09g01460.1 238 CLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRL 272
                      99*****************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-7820324IPR016679Transcription factor, GATA, plant
SMARTSM004012.6E-16232282IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.321232268IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-14235295No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14236270IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.42E-14237284No hitNo description
PfamPF003202.0E-15238272IPR000679Zinc finger, GATA-type
PROSITE patternPS003440238263IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEAPEYFVGG YYAAGGADQF SQQDKRHADQ KIGESFAIDD LLDFSHADAI MSDGFFDNVA  60
GNSTDSSTVT AVDSCNSSIS GSDNRFAAAI VPRGYAGDPQ FSGELCVPYD DMAELEWLSN  120
FVEDSFSAEE ELKTLQLLSG AAASTAIGAK PQTPESSSST DTLPSFASDE TARNAPFLHT  180
ETPLPGKARS KRSRAAPGDW STRLLRLVAP EQERPPQAKD SPVKKREGTN TECSGRKCLH  240
CGAEKTPQWR TGPMGPKTLC NACGVRFKSG RLVPEYRPAA SPTFVSTKHS NSHRKVLELR  300
RQKEMHRQQH QQLMSQSSIF GVSNGGDEFL IHHHHHHQHC GPDFRHVI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g01460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515971.10.0GATA transcription factor 9
TrEMBLA0A1S3VC930.0A0A1S3VC93_VIGRR; GATA transcription factor
STRINGXP_007135644.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-78GATA transcription factor 9