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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi09g01460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GATA | ||||||||
Protein Properties | Length: 349aa MW: 38077.1 Da PI: 6.6087 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.5 | 7.8e-18 | 238 | 272 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l Vradi09g01460.1 238 CLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRL 272 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.9E-78 | 20 | 324 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 2.6E-16 | 232 | 282 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.321 | 232 | 268 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.28E-14 | 235 | 295 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.4E-14 | 236 | 270 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.42E-14 | 237 | 284 | No hit | No description |
Pfam | PF00320 | 2.0E-15 | 238 | 272 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 238 | 263 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MEAPEYFVGG YYAAGGADQF SQQDKRHADQ KIGESFAIDD LLDFSHADAI MSDGFFDNVA 60 GNSTDSSTVT AVDSCNSSIS GSDNRFAAAI VPRGYAGDPQ FSGELCVPYD DMAELEWLSN 120 FVEDSFSAEE ELKTLQLLSG AAASTAIGAK PQTPESSSST DTLPSFASDE TARNAPFLHT 180 ETPLPGKARS KRSRAAPGDW STRLLRLVAP EQERPPQAKD SPVKKREGTN TECSGRKCLH 240 CGAEKTPQWR TGPMGPKTLC NACGVRFKSG RLVPEYRPAA SPTFVSTKHS NSHRKVLELR 300 RQKEMHRQQH QQLMSQSSIF GVSNGGDEFL IHHHHHHQHC GPDFRHVI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi09g01460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014515971.1 | 0.0 | GATA transcription factor 9 | ||||
TrEMBL | A0A1S3VC93 | 0.0 | A0A1S3VC93_VIGRR; GATA transcription factor | ||||
STRING | XP_007135644.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1364 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 4e-78 | GATA transcription factor 9 |