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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g23420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 232aa MW: 26232.5 Da PI: 9.4351 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 70.1 | 4.2e-22 | 2 | 84 | 13 | 86 |
trihelix 13 arremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 ++r+ e+++rrg+ + +p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++es s +++ ++l+ Vradi08g23420.1 2 GKRDAENKFRRGRtaglplgsgQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREESDSFWVMRNDLR 84 589999****987777888888**********************************************9999999*9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.1E-10 | 26 | 79 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGKRDAENKF RRGRTAGLPL GSGQVEPKWA SVSSYCRKHG VNRGPVQCRK RWSNLAGDYK 60 KIKEWESQIR EESDSFWVMR NDLRRDRKLP GFFDKEVYDI LDSGSQDFEQ DEVSASPEKK 120 DIFPPSNRDF PAPIPISGVT NEKQSTPNPE MGSTSQGERK RKRLSTEGGE ETLQIHLIDV 180 LERNGKMLSA QLEAQNINFQ LDREQRKING SNLVAVLDKL ADALGRIADK L* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g23420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-172 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027936927.1 | 1e-142 | trihelix transcription factor ASR3-like | ||||
Swissprot | Q8VZ20 | 4e-91 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A445IUR6 | 1e-127 | A0A445IUR6_GLYSO; Trihelix transcription factor ASR3 isoform A | ||||
TrEMBL | I1LFM1 | 1e-127 | I1LFM1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G44620.1 | 1e-128 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2165 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-84 | Trihelix family protein |
Publications ? help Back to Top | |||
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