PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi08g22550.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WOX

Protein Properties

Length: 282aa MW: 31628.3 Da PI: 6.7822

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi08g22550.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.9	6.3e-22	94	154	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+e+++e++++l +++e++V++WFqNrRa+ k+ Vradi08g22550.1 94 RQRWTPTPVQLQILERIFDQgNGTPSKEKIKEITAELgqhgQISETNVYNWFQNRRARSKR 154 89***************99************************************97 PP
2	Wus_type_Homeobox	102	4.3e-33	93	155	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtPtp Q++iLe+++++G tP+ke+i++itaeL ++G+i+++NV++WFQNr+aR+++k Vradi08g22550.1 93 SRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRK 155 789***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.9E-18	88	157	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.289	90	155	IPR001356	Homeobox domain
SMART	SM00389	8.8E-16	92	159	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.27E-19	92	156	IPR009057	Homeodomain-like
Pfam	PF00046	9.1E-20	94	154	IPR001356	Homeobox domain
CDD	cd00086	4.02E-15	94	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MVNVVELQKQ LQRWQQSGNN VNVDANGELM YVKVMTDEQL ETLRKQIAVY ATICDQLIEM 60 HRTLSAQQDL AGARLGNLYC DPLMTSGGHK ITSRQRWTPT PVQLQILERI FDQGNGTPSK 120 EKIKEITAEL GQHGQISETN VYNWFQNRRA RSKRKLQNVA PSNTESEVDT EVDSKDKKTK 180 PEEFLSQHNI TTSGGSEKLC FQNPQVYSDL QYLNPDSNKP YSMFPSDGSL KSTRNLTHVS 240 VFNQVLSNSR SECAGGKMEV GGTVSYNLFH QTGDCNLGSD F*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi08g22550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014512537.1	0.0	WUSCHEL-related homeobox 13
Swissprot	O81788	2e-80	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A1S3V2X7	0.0	A0A1S3V2X7_VIGRR; WUSCHEL-related homeobox 13
STRING	XP_007142723.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	7e-83	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]