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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g20910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 113aa MW: 13045.2 Da PI: 8.8229 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 49.8 | 5.3e-16 | 28 | 53 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg Vradi08g20910.1 28 FKTELCNKWQETGTCPYGDHCQFAHG 53 79***********************8 PP | |||||||
2 | zf-CCCH | 20.6 | 7.6e-07 | 66 | 90 | 1 | 25 |
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H Vradi08g20910.1 66 YKTEVCRMVLA-GvVCPYGHRCHFRH 90 9**********.66**********88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-20 | 23 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-12 | 24 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.004 | 27 | 55 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-9 | 27 | 54 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-13 | 28 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-12 | 61 | 94 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-9 | 61 | 95 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-4 | 65 | 92 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.803 | 65 | 93 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MVQQKVYVRG GQKEEEPLEM VVYNQGMFKT ELCNKWQETG TCPYGDHCQF AHGIGELRPV 60 IRHPRYKTEV CRMVLAGVVC PYGHRCHFRH ALTEQEKAVV SQPKPRTMKL ER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 1e-22 | 28 | 94 | 4 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g20910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-174 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413212.1 | 5e-80 | PREDICTED: zinc finger CCCH domain-containing protein 15 | ||||
Swissprot | Q9C9F5 | 4e-55 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A0S3SM08 | 1e-78 | A0A0S3SM08_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142975.1 | 3e-77 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2778 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-57 | C3H family protein |