PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g19060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 419aa    MW: 46789.7 Da    PI: 5.7132
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g19060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.81.4e-2675161188
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                      +fYn+YA+ vGF+vrk+  ++sk +g++++r+f+Cskeg+r+++k++ ++ +++r+etrtgC a++ v+++ +gk++vt++e eHnH+
  Vradi08g19060.1  75 RFYNKYATLVGFNVRKDWINRSKVHGQVVSRKFTCSKEGYRRKDKRD-VNVKKHRKETRTGCLAHMIVTRQPNGKYQVTHFEAEHNHD 161
                      5*******************************************999.999************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-2475161IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDGNRNGFGI LHEAGVDVGP QMSNNLDLNV EQNCCSPIIA HAIDNQSCPP SKSVHSTNTV  60
LGIGAEFESD DHAYRFYNKY ATLVGFNVRK DWINRSKVHG QVVSRKFTCS KEGYRRKDKR  120
DVNVKKHRKE TRTGCLAHMI VTRQPNGKYQ VTHFEAEHNH DNVNPNNANV VNLLNEFSVA  180
RAGEAESNNN NPKRVVASCY KDLCHKLLKL STRASESEEA YQFAMRQLDE VMVGVEKILT  240
PEAEGEVVTS RNTDADASES EPAKIFPNEH VIEDQDEINS ANGGKDRRAT SDRGHLTTMT  300
CNGADSDRVL NVEESPQSTV GLYSFEANQV VNCMYEQPNL MVDSQSNSGM MQPQNIFSNP  360
QDSPGQSQLL QEPIIQSTYL ESMPINNQMR QGMDLDIQNP HSSSFLLYDH RYRSSESA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g19060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514273.11e-153protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1S3V7F01e-151A0A1S3V7F0_VIGRR; protein FAR1-RELATED SEQUENCE 5
STRINGXP_007143371.11e-130(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-17FAR1 family protein