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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g19060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 419aa MW: 46789.7 Da PI: 5.7132 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.8 | 1.4e-26 | 75 | 161 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA+ vGF+vrk+ ++sk +g++++r+f+Cskeg+r+++k++ ++ +++r+etrtgC a++ v+++ +gk++vt++e eHnH+ Vradi08g19060.1 75 RFYNKYATLVGFNVRKDWINRSKVHGQVVSRKFTCSKEGYRRKDKRD-VNVKKHRKETRTGCLAHMIVTRQPNGKYQVTHFEAEHNHD 161 5*******************************************999.999************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.3E-24 | 75 | 161 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MDGNRNGFGI LHEAGVDVGP QMSNNLDLNV EQNCCSPIIA HAIDNQSCPP SKSVHSTNTV 60 LGIGAEFESD DHAYRFYNKY ATLVGFNVRK DWINRSKVHG QVVSRKFTCS KEGYRRKDKR 120 DVNVKKHRKE TRTGCLAHMI VTRQPNGKYQ VTHFEAEHNH DNVNPNNANV VNLLNEFSVA 180 RAGEAESNNN NPKRVVASCY KDLCHKLLKL STRASESEEA YQFAMRQLDE VMVGVEKILT 240 PEAEGEVVTS RNTDADASES EPAKIFPNEH VIEDQDEINS ANGGKDRRAT SDRGHLTTMT 300 CNGADSDRVL NVEESPQSTV GLYSFEANQV VNCMYEQPNL MVDSQSNSGM MQPQNIFSNP 360 QDSPGQSQLL QEPIIQSTYL ESMPINNQMR QGMDLDIQNP HSSSFLLYDH RYRSSESA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g19060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014514273.1 | 1e-153 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1S3V7F0 | 1e-151 | A0A1S3V7F0_VIGRR; protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | XP_007143371.1 | 1e-130 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-17 | FAR1 family protein |