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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g19030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 794aa MW: 87196.1 Da PI: 5.7404 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.3 | 2e-21 | 68 | 123 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r +L+k+lgL+ +qVk+WFqNrR+++k Vradi08g19030.1 68 KKRYHRHTPHQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMK 123 688999***********************************************999 PP | |||||||
2 | START | 161.6 | 5.8e-51 | 278 | 527 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++a++el+k+ +ae+p+W ks e n +e+ ++f++ + + +ea r++g+v+ ++ lve+l+d + +W e+++ +a l Vradi08g19030.1 278 LALAAMEELLKMTQAESPLWIKSLdgekEVFNHEEYARSFSPCIGpkpngYVTEATRETGIVIINSLALVETLMDAN-RWAEMFPsmiaRAINL 370 6899********************876666689*******998889*******************************.*******99999999* PP EEECTT................................EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSE CS START 83 evissg................................galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvv 143 +vis+g +m ae q+lsplvp R + f+R+++q+ +g+w++vdvS+d+ + + ++++ Vradi08g19030.1 371 DVISNGmggtrngalqvvrfftvymldfvlifagtddqDYTFQMHAEVQLLSPLVPvRQVRFIRFCKQHAEGVWAVVDVSIDVGHDAANAQPFM 464 ***********************************9955556889999**************************************999***** PP E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 144 RaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++lpSg+++++++ng+skvtw+eh++++++ +h+l+r+l++sg+ +ga +w atlqrqce+ Vradi08g19030.1 465 SCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESGVHQLYRPLLSSGVGFGAHRWIATLQRQCEC 527 *************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-20 | 52 | 125 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-22 | 54 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.686 | 65 | 125 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-19 | 66 | 129 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.54E-19 | 67 | 125 | No hit | No description |
Pfam | PF00046 | 4.4E-19 | 68 | 123 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 100 | 123 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 40.04 | 268 | 530 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.09E-28 | 270 | 378 | No hit | No description |
CDD | cd08875 | 1.00E-113 | 272 | 526 | No hit | No description |
SMART | SM00234 | 1.3E-23 | 277 | 527 | IPR002913 | START domain |
Pfam | PF01852 | 8.7E-42 | 278 | 527 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.09E-28 | 412 | 527 | No hit | No description |
SuperFamily | SSF55961 | 3.21E-21 | 555 | 787 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 794 aa Download sequence Send to blast |
MQNSSSFSYS NQRKMEGPSE MGLIGENFDA GLMGRMRDDE YESRSGSDNF DGVSGDDQDG 60 GDDQPQRKKR YHRHTPHQIQ ELESFFKECP HPDEKQRLDL SKRLGLENKQ VKFWFQNRRT 120 QMKTQLERHE NIMLRQENDK LRAENSLMKE AMSNPVCNSC GGPAIPGQIS FEEHQIRIEN 180 ARLKDELNRI CALANKFLGK PISSMTSPMA LPTSNSGLEL GIGRSGLGGS STLGTPLPMG 240 LDLGDGVLGT QTAMPGIRPS LGLMGNEVQL ERSMLIDLAL AAMEELLKMT QAESPLWIKS 300 LDGEKEVFNH EEYARSFSPC IGPKPNGYVT EATRETGIVI INSLALVETL MDANRWAEMF 360 PSMIARAINL DVISNGMGGT RNGALQVVRF FTVYMLDFVL IFAGTDDQDY TFQMHAEVQL 420 LSPLVPVRQV RFIRFCKQHA EGVWAVVDVS IDVGHDAANA QPFMSCRRLP SGCIVQDMPN 480 GYSKVTWLEH WEYDESGVHQ LYRPLLSSGV GFGAHRWIAT LQRQCECLAI LMSSSISSDD 540 HTALSQAGRR SMLKLAQRMT SNFCSGVCAS SARKWDMLHI GTLGDDMKVM TRKNVDDPGE 600 PPGIVLSAAT SVWMPVSRQR VFDFLRDERL RSEWDILSNG GPMQEMVHIA KGQGHGNCVS 660 LLRANAVNAN DSSMLILQET WMDASCSVVV YAPVDVQSLN VVMSGGDSAY VALLPSGFAI 720 VPDGHCNNSS SSCNGTMQKG GGGEESGGSL LTVGFQILVN SLPTAKLTVE SVDTVNNLIS 780 CTIQKIKGAL RVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g19030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014514419.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Refseq | XP_022641349.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A1S3V8F6 | 0.0 | A0A1S3V8F6_VIGRR; homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
STRING | XP_007143378.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Publications ? help Back to Top | |||
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