PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi08g18730.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Nin-like

Protein Properties

Length: 1040aa MW: 115186 Da PI: 5.7962

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi08g18730.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.5	1.3e-28	633	683	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Vradi08g18730.1 633 EKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 683 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	622	703	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-25	636	683	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.18E-24	940	1029	No hit	No description
PROSITE profile	PS51745	25.438	944	1026	IPR000270	PB1 domain
SMART	SM00666	2.3E-25	944	1026	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-27	944	1026	No hit	No description
Pfam	PF00564	1.7E-19	944	1025	IPR000270	PB1 domain
CDD	cd06407	1.68E-38	945	1025	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1040 aa Download sequence Send to blast
MSESEEENTD CVPRSKPAEE GGCTMDFDLD LETSWPLDHM AFGSNPMSPF LFSSNSDQPY 60 SPLWAFSDGE DTKFPASAFS DCHKIFPCDS NSIAEKPEEN DDNKKILPPL APMPPLENVG 120 GYCVIKERMT QALRYFKELT ELNVLAQVWA PVRNGNRYVL TTSGQPFVLD PHSNGLHQYR 180 TVSLMYTFAV DGENDGSLGL PGRVFQQKLP EWTPNVLYYS SKEYPRRDHA QHYNVRGSLA 240 LPVFEPALQS CIGVLELIMT SQKINYAPEV DKICKALEVG FLLTWLIMPI ICSYSKFEEF 300 GNFGPSIHSG DLTIRHGASP SVILLLFIIL TLCSHRYNLA MLLNQICNEG RQNALSEILE 360 ILTVVCETHN LPLAQTWIPC KHRSVLAQGG GVKKICSSFD GSCMGKVCMS TTDVAFYIID 420 AHLWGFREAC VEHHLQQSQG VAGRAFLSHS MCFCSNITQF CKTDYPLVHY ALMFGLTSCF 480 AICLRSSHTG TDDYVLEFFL PPRITDFHEQ KTLLASILAT MKQHFQSLKI ASGVELEDGS 540 VEIIEATIER IHTRLESIPI APSIRSPPRP DTSPNMEEEG PLDPSEQHIL MYCNGTNHGS 600 NLSDQAGGKI DHMITLETKT SKKPLERKRG KTEKSISLEV LQRYFAGSLK DAAKSLGVCP 660 TTMKRICRQH GISRWPSRKI NKVNRSLSKL KRVIESVQGA EGAFGLNSLG TSPLPIAVGS 720 LPEPSTPDKF SQPVSMNIRP SEPQMKVNEL NASKELETNR EAGMEDQLVG GRIHNIERVT 780 NDKRGFTQEI GKEPKRTRTG SGSSEDSTNP PSHGSWHDSI PNESSHVKDL FITSNHDQCA 840 VLRRSPESTL QPATNTPNQS TPFRMPEFVA AELQEPFGGM LIEDAGSSKD LRNLCPSVAE 900 AILEDLVPEA CGTNPPALDL SPKQSMGAPN KTVTPFAATK EMKTVTIKAT YREDIIRFRV 960 SLTCGIVELK EEVAKRLKLE MGTFDIKYLD DDHEWVLIAC DADLQECMDV SRSSGSNIIR 1020 VLVHDMTSNL GSSCESSGE*

Sequence ? help Back to Top

Protein Sequence Length: 1040 aa Download sequence Send to blast

MSESEEENTD CVPRSKPAEE GGCTMDFDLD LETSWPLDHM AFGSNPMSPF LFSSNSDQPY  60
SPLWAFSDGE DTKFPASAFS DCHKIFPCDS NSIAEKPEEN DDNKKILPPL APMPPLENVG  120
GYCVIKERMT QALRYFKELT ELNVLAQVWA PVRNGNRYVL TTSGQPFVLD PHSNGLHQYR  180
TVSLMYTFAV DGENDGSLGL PGRVFQQKLP EWTPNVLYYS SKEYPRRDHA QHYNVRGSLA  240
LPVFEPALQS CIGVLELIMT SQKINYAPEV DKICKALEVG FLLTWLIMPI ICSYSKFEEF  300
GNFGPSIHSG DLTIRHGASP SVILLLFIIL TLCSHRYNLA MLLNQICNEG RQNALSEILE  360
ILTVVCETHN LPLAQTWIPC KHRSVLAQGG GVKKICSSFD GSCMGKVCMS TTDVAFYIID  420
AHLWGFREAC VEHHLQQSQG VAGRAFLSHS MCFCSNITQF CKTDYPLVHY ALMFGLTSCF  480
AICLRSSHTG TDDYVLEFFL PPRITDFHEQ KTLLASILAT MKQHFQSLKI ASGVELEDGS  540
VEIIEATIER IHTRLESIPI APSIRSPPRP DTSPNMEEEG PLDPSEQHIL MYCNGTNHGS  600
NLSDQAGGKI DHMITLETKT SKKPLERKRG KTEKSISLEV LQRYFAGSLK DAAKSLGVCP  660
TTMKRICRQH GISRWPSRKI NKVNRSLSKL KRVIESVQGA EGAFGLNSLG TSPLPIAVGS  720
LPEPSTPDKF SQPVSMNIRP SEPQMKVNEL NASKELETNR EAGMEDQLVG GRIHNIERVT  780
NDKRGFTQEI GKEPKRTRTG SGSSEDSTNP PSHGSWHDSI PNESSHVKDL FITSNHDQCA  840
VLRRSPESTL QPATNTPNQS TPFRMPEFVA AELQEPFGGM LIEDAGSSKD LRNLCPSVAE  900
AILEDLVPEA CGTNPPALDL SPKQSMGAPN KTVTPFAATK EMKTVTIKAT YREDIIRFRV  960
SLTCGIVELK EEVAKRLKLE MGTFDIKYLD DDHEWVLIAC DADLQECMDV SRSSGSNIIR  1020
VLVHDMTSNL GSSCESSGE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi08g18730.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014513884.1	0.0	protein NLP6
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S3V6X3	0.0	A0A1S3V6X3_VIGRR; protein NLP6
STRING	XP_007143431.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]