PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g18160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 352aa    MW: 40070.7 Da    PI: 5.3796
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g18160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.52.8e-2658152183
         trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                      +Wt+++v++Li+a+++++e++  +            +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++
  Vradi08g18160.1  58 KWTDKMVRLLITAVSYIGEDVTVDGggsgrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALL 151
                      7***************99999975445567778888**********************************************568988888777 PP

         trihelix  83 d 83 
                      d
  Vradi08g18160.1 152 D 152
                      6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-2456181No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGTLQNCDQT ISMTEFSKEN RSKNSASEED EPSFTEDGVD CHHEASRGKK GSPWQRVKWT  60
DKMVRLLITA VSYIGEDVTV DGGGSGRRKF AVLQKKGKWK SVSKVMAERG YHVSPQQCED  120
KFNDLNKRYK KLNDMLGRGT SCQVVENPAL LDVIDFLSDK EKDDVRKILS SKHLFYEEMC  180
SYHNGGPVKK LKQGQGQEDG NTFGNSLNCQ DYNRSSYPHG QMVQSDVNQA LPESMRAAWL  240
QKQWVESRSL QLEEQKLQIQ VEMLELEKQR FKWQRVSVLS LGESSDSAVK AEKEVEVNYG  300
NRRSVDACYN NRLEEVTEDS CKEETPVEED FIHLCKDATE AIAQWNGIEQ Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g18160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536428.11e-154uncharacterized protein LOC100812134
RefseqXP_028184280.11e-154uncharacterized protein LOC114371077
TrEMBLA0A445IRA21e-152A0A445IRA2_GLYSO; Uncharacterized protein
TrEMBLI1LDG71e-152I1LDG7_SOYBN; Uncharacterized protein
STRINGGLYMA10G36980.11e-153(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2433833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-97sequence-specific DNA binding transcription factors