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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g18160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 352aa MW: 40070.7 Da PI: 5.3796 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 83.5 | 2.8e-26 | 58 | 152 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +Wt+++v++Li+a+++++e++ + +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++ Vradi08g18160.1 58 KWTDKMVRLLITAVSYIGEDVTVDGggsgrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALL 151 7***************99999975445567778888**********************************************568988888777 PP trihelix 83 d 83 d Vradi08g18160.1 152 D 152 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.2E-24 | 56 | 181 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MGTLQNCDQT ISMTEFSKEN RSKNSASEED EPSFTEDGVD CHHEASRGKK GSPWQRVKWT 60 DKMVRLLITA VSYIGEDVTV DGGGSGRRKF AVLQKKGKWK SVSKVMAERG YHVSPQQCED 120 KFNDLNKRYK KLNDMLGRGT SCQVVENPAL LDVIDFLSDK EKDDVRKILS SKHLFYEEMC 180 SYHNGGPVKK LKQGQGQEDG NTFGNSLNCQ DYNRSSYPHG QMVQSDVNQA LPESMRAAWL 240 QKQWVESRSL QLEEQKLQIQ VEMLELEKQR FKWQRVSVLS LGESSDSAVK AEKEVEVNYG 300 NRRSVDACYN NRLEEVTEDS CKEETPVEED FIHLCKDATE AIAQWNGIEQ Q* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g18160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003536428.1 | 1e-154 | uncharacterized protein LOC100812134 | ||||
Refseq | XP_028184280.1 | 1e-154 | uncharacterized protein LOC114371077 | ||||
TrEMBL | A0A445IRA2 | 1e-152 | A0A445IRA2_GLYSO; Uncharacterized protein | ||||
TrEMBL | I1LDG7 | 1e-152 | I1LDG7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G36980.1 | 1e-153 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24338 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-97 | sequence-specific DNA binding transcription factors |