PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g18150.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 445aa    MW: 49915.9 Da    PI: 10.4412
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g18150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.49.2e-1424723686
         trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                     kkm+e g++rs+k+Ckek+en+ k++k++keg++++  ++ +t+++fdql+
  Vradi08g18150.1 24 KKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGK--QDGKTYRFFDQLQ 72
                     79********************************95..67778******98 PP
2trihelix64.81.9e-20388445158
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenln 58 
                      rW+k ev+aLi++r++++ +++++  k+plWee+s+ mr+ g++r++k+Ckekwen+n
  Vradi08g18150.1 388 RWPKVEVQALIKLRTNLDPKYQENGPKGPLWEEISSSMRKLGYNRNAKRCKEKWENIN 445
                      8*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.4E-92474No hitNo description
CDDcd122038.99E-27387445No hitNo description
PfamPF138372.5E-12387445No hitNo description
Gene3DG3DSA:1.10.10.603.5E-4387444IPR009057Homeodomain-like
PROSITE profilePS500907.271387445IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MQVLRVLCGK KYPGASPLQL NYIKKMAELG YHRSSKKCKE KFENVYKYHK RTKEGRSGKQ  60
DGKTYRFFDQ LQALENHTPT PHSPKPSPKL PQSAPSRVIA ATAASLSLPI ATASTTASSL  120
SLPIPTTITT VPMQPILSNT TLTSTVPHIT VPSTTTLPIT IPQPMLTTPS IHLSTPSYPP  180
TNPTTNTAPP PSFPTLPTDT FSNSSSSSTS SDETLEGRRK RKRKWKDFFE RLMKEVIQKQ  240
EDLQKKFLEA IEKREHERIA REEAWRVQEM QRINREREIL AQERSIAAAK DAAVMSFLQK  300
VAEQQNLGQA LNSINLVQQP SQQQPQPPLQ QLPPSSVAPS PVQQPLPAVV SQPLVFPVVS  360
QVTNMEIVKV DNNNNNSSEN FTPSSSSRWP KVEVQALIKL RTNLDPKYQE NGPKGPLWEE  420
ISSSMRKLGY NRNAKRCKEK WENIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222RRKRKR
2217223RRKRKRK
3218223RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g18150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514283.10.0trihelix transcription factor GT-2
TrEMBLA0A1S3V7F80.0A0A1S3V7F8_VIGRR; trihelix transcription factor GT-2
STRINGXP_007143535.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-33Trihelix family protein