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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g18140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 368aa MW: 41804.3 Da PI: 9.9032 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 104.7 | 6.7e-33 | 198 | 283 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++e++++++ k+plWe++s+ m + g++rs+k+Ckekwen+nk++kk+ke++k r e+s+tcpyf++l+a Vradi08g18140.1 198 RWPKAEVHALIRLRTSLETKYQENGPKAPLWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESNKHR-RENSKTCPYFHELDA 283 8********************************************************************87.78889********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.178 | 191 | 255 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-4 | 194 | 254 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 6.0E-23 | 197 | 284 | No hit | No description |
CDD | cd12203 | 2.82E-27 | 197 | 262 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MNNLFSTTST SSSTASDEDL EEKYRKKRKW KDYFRRLTRQ VLAKQEEMQK RFLEAIDKRE 60 REHVAQQEAW RIQEMARINR EHELLVQERS TAAAKNAAVI AFLQQLSGQN QNQNPSTQTG 120 ANFLQTPPSQ PPPPPQVSQV KPPPQPQIPL VMSNNNNIEI QKMNNGHSAV AATPTTAATA 180 ICVVATTPTS LNSLSSSRWP KAEVHALIRL RTSLETKYQE NGPKAPLWED ISAGMLRLGY 240 NRSAKRCKEK WENINKYFKK VKESNKHRRE NSKTCPYFHE LDALYKEKSK SQNPFGVSFL 300 NMKPHEMMEP LMVQPEQHLK ADHWSCGSHS GRHELGSELR SLATVHMGQQ STRSCSGCTC 360 FSALEYL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g18140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014514238.1 | 0.0 | trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 2e-79 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A1S3V7B6 | 0.0 | A0A1S3V7B6_VIGRR; trihelix transcription factor GT-2-like | ||||
STRING | XP_007143537.1 | 1e-173 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 3e-50 | Trihelix family protein |