PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g16390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 385aa    MW: 42688.3 Da    PI: 7.4132
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g16390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.52.6e-32211266156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+++LH+rF++a++qLGG++ AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  Vradi08g16390.1 211 KQRRCWSQDLHKRFLHALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLH 266
                      79****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.598208268IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-29209269IPR009057Homeodomain-like
SuperFamilySSF466894.75E-18209269IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-27211266IPR006447Myb domain, plants
PfamPF002492.4E-7213264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MYFFTEKMQR LKMGFPDYIQ ALEEERRKIQ VFCKELPLSF ELVTQAIEAC RQQLSGTTSE  60
YNLNGQSECS ERTTSSEGPV LEEFIPIKKR ASSSPCCDED DEDYEQHSLR QTVLNEDNKN  120
NDKRKSDWLR SVQLWNPDPP AEEDATKKVP GMELKRSGSG GGAFQPFHKE ERAAKATETL  180
YKAPSSTRVA AASSSAGELT PEKNQNEGQR KQRRCWSQDL HKRFLHALQQ LGGADSATPK  240
QIRELMNVDG LTNDEVKSHL QKYRLHTRRP SPLVHNSSSP QAAPFVLVGN IFVQSPEYAA  300
VATSTASREV TTVTAPAGVY APVATHPTPV SQPSADSIKK PQFKKFKHSE HSNSDERGHH  360
SEGAVHSNSP TSSSSTHTSA SPSY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g16390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311960.0KT031196.1 Glycine max clone HN_CCL_161 MYB/HD-like transcription factor (Glyma10g34780.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510977.10.0transcription factor HHO3 isoform X1
SwissprotQ9FPE84e-90HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A1S3UYE70.0A0A1S3UYE7_VIGRR; transcription factor HHO3 isoform X1
STRINGXP_007143802.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.12e-87G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]