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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g16390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 385aa MW: 42688.3 Da PI: 7.4132 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.5 | 2.6e-32 | 211 | 266 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+++LH+rF++a++qLGG++ AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Vradi08g16390.1 211 KQRRCWSQDLHKRFLHALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLH 266 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.598 | 208 | 268 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-29 | 209 | 269 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.75E-18 | 209 | 269 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-27 | 211 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-7 | 213 | 264 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MYFFTEKMQR LKMGFPDYIQ ALEEERRKIQ VFCKELPLSF ELVTQAIEAC RQQLSGTTSE 60 YNLNGQSECS ERTTSSEGPV LEEFIPIKKR ASSSPCCDED DEDYEQHSLR QTVLNEDNKN 120 NDKRKSDWLR SVQLWNPDPP AEEDATKKVP GMELKRSGSG GGAFQPFHKE ERAAKATETL 180 YKAPSSTRVA AASSSAGELT PEKNQNEGQR KQRRCWSQDL HKRFLHALQQ LGGADSATPK 240 QIRELMNVDG LTNDEVKSHL QKYRLHTRRP SPLVHNSSSP QAAPFVLVGN IFVQSPEYAA 300 VATSTASREV TTVTAPAGVY APVATHPTPV SQPSADSIKK PQFKKFKHSE HSNSDERGHH 360 SEGAVHSNSP TSSSSTHTSA SPSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00160 | DAP | Transfer from AT1G25550 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g16390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031196 | 0.0 | KT031196.1 Glycine max clone HN_CCL_161 MYB/HD-like transcription factor (Glyma10g34780.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014510977.1 | 0.0 | transcription factor HHO3 isoform X1 | ||||
Swissprot | Q9FPE8 | 4e-90 | HHO3_ARATH; Transcription factor HHO3 | ||||
TrEMBL | A0A1S3UYE7 | 0.0 | A0A1S3UYE7_VIGRR; transcription factor HHO3 isoform X1 | ||||
STRING | XP_007143802.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3918 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25550.1 | 2e-87 | G2-like family protein |
Publications ? help Back to Top | |||
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